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Protein

UPF0115 protein YfcN

Gene

yfcN

Organism
Escherichia coli (strain SE11)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciECOL409438:GHUU-2680-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0115 protein YfcNUniRule annotation
Gene namesi
Name:yfcNUniRule annotation
Ordered Locus Names:ECSE_2640
OrganismiEscherichia coli (strain SE11)
Taxonomic identifieri409438 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000008199 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 183183UPF0115 protein YfcNPRO_1000136041Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliB6I4X8.
SMRiB6I4X8. Positions 93-174.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini98 – 17376SmrUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the UPF0115 family.UniRule annotation
Contains 1 Smr domain.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000257487.
OMAiEHVYCAS.
OrthoDBiEOG66B3ZJ.

Family and domain databases

HAMAPiMF_01042. UPF0115.
InterProiIPR002625. Smr_dom.
IPR022990. UPF0115.
[Graphical view]
PfamiPF01713. Smr. 1 hit.
[Graphical view]
SMARTiSM00463. SMR. 1 hit.
[Graphical view]
SUPFAMiSSF160443. SSF160443. 1 hit.
PROSITEiPS50828. SMR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B6I4X8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKKTTLSEE DQALFRQLMA GTRKIKQDTI VHRPQRKKIS EVPVKRLIQE
60 70 80 90 100
QADASHYFSD EFQPLLNTEG PVKYVRPDVS HFEAKKLRRG DYSPELFLDL
110 120 130 140 150
HGLTQLQAKQ ELGALIAACR REHVFCACVM HGHGKHILKQ QTPLWLAQHP
160 170 180
HVMAFHQAPK EYGGDAALLV LIEVEEWLPP ELP
Length:183
Mass (Da):21,013
Last modified:December 16, 2008 - v1
Checksum:iD1FF3D68CF8C1DF2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009240 Genomic DNA. Translation: BAG78164.1.
RefSeqiWP_000730806.1. NC_011415.1.

Genome annotation databases

EnsemblBacteriaiBAG78164; BAG78164; ECSE_2640.
KEGGiecy:ECSE_2640.
PATRICi18423838. VBIEscCol83070_2803.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009240 Genomic DNA. Translation: BAG78164.1.
RefSeqiWP_000730806.1. NC_011415.1.

3D structure databases

ProteinModelPortaliB6I4X8.
SMRiB6I4X8. Positions 93-174.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAG78164; BAG78164; ECSE_2640.
KEGGiecy:ECSE_2640.
PATRICi18423838. VBIEscCol83070_2803.

Phylogenomic databases

HOGENOMiHOG000257487.
OMAiEHVYCAS.
OrthoDBiEOG66B3ZJ.

Enzyme and pathway databases

BioCyciECOL409438:GHUU-2680-MONOMER.

Family and domain databases

HAMAPiMF_01042. UPF0115.
InterProiIPR002625. Smr_dom.
IPR022990. UPF0115.
[Graphical view]
PfamiPF01713. Smr. 1 hit.
[Graphical view]
SMARTiSM00463. SMR. 1 hit.
[Graphical view]
SUPFAMiSSF160443. SSF160443. 1 hit.
PROSITEiPS50828. SMR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult."
    Oshima K., Toh H., Ogura Y., Sasamoto H., Morita H., Park S.-H., Ooka T., Iyoda S., Taylor T.D., Hayashi T., Itoh K., Hattori M.
    DNA Res. 15:375-386(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SE11.

Entry informationi

Entry nameiYFCN_ECOSE
AccessioniPrimary (citable) accession number: B6I4X8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: December 16, 2008
Last modified: November 11, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.