B6I493 (B6I493_ECOSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcriptional activator EMBL BAG78926.1

Gene names

Ordered Locus Names:

ECSE_3402 EMBL BAG78926.1

Organism

Escherichia coli (strain SE11) [Complete proteome] [HAMAP] EMBL BAG78926.1

Taxonomic identifier

409438 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	312 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH lysR-type DNA-binding domain. RuleBase RU000709 SAAS SAAS005119

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000709 SAAS SAAS005119
Ligand	DNA-binding RuleBase RU000709 SAAS SAAS005119
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B6I493 [UniParc]. Last modified December 16, 2008. Version 1. Checksum: 1ADD366D71ED68AB	FASTA	312	34,539
	10 20 30 40 50 60 MSTILLPKTQ HLVVFQEVIR SGSIGSAAKE LGLTQPAVSK IINDIEDYFG VELVVRKNTG 70 80 90 100 110 120 VTLTPAGQLL LSRSESITRE MKNMVNEISG MSSEAVVEVS FGFPSLIGFT FMSGMINKFK 130 140 150 160 170 180 EVFPKAQVSM YEAQLSSFLP AIRDGRLDFA IGTLSAEMKL QDLHVEPLFE SEFVLVASKS 190 200 210 220 230 240 RTCTGTTTLE SLKNEQWVLP QTNMGYYSEL LTTLQRNGIS IENIVKTDSV VTIYNLVLNA 250 260 270 280 290 300 DFLTVIPCDM TSPFGSNQFI TIPVEETLPV AQYAAVWSKN YRIKKAASVL VELAKEYSSY 310 NGCRRRQLIE VG

References

[1]

"Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult." Oshima K., Toh H., Ogura Y., Sasamoto H., Morita H., Park S.-H., Ooka T., Iyoda S., Taylor T.D., Hayashi T., Itoh K., Hattori M. DNA Res. 15:375-386(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SE11 EMBL BAG78926.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP009240 Genomic DNA. Translation: BAG78926.1.
RefSeq	YP_002294677.1. NC_011415.1.
3D structure databases
ProteinModelPortal	B6I493.
SMR	B6I493. Positions 6-298.
ModBase	Search...
Protein-protein interaction databases
STRING	409438.ECSE_3402.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAG78926; BAG78926; ECSE_3402.
GeneID	7001787.
KEGG	ecy:ECSE_3402.
PATRIC	18425418. VBIEscCol83070_3571.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0583.
HOGENOM	HOG000233526.
KO	K07592.
OMA	AIWSKNY.
ProtClustDB	PRK10341.
Enzyme and pathway databases
BioCyc	ECOL409438:GHUU-3589-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR005119. LysR_subst-bd. IPR000847. Tscrpt_reg_HTH_LysR. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00126. HTH_1. 1 hit. PF03466. LysR_substrate. 1 hit. [Graphical view]
PRINTS	PR00039. HTHLYSR.
PROSITE	PS50931. HTH_LYSR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B6I493_ECOSE

Accession

Primary (citable) accession number: B6I493

Entry history

Integrated into UniProtKB/TrEMBL:	December 16, 2008
Last sequence update:	December 16, 2008
Last modified:	May 1, 2013
This is version 37 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)