B6ERB8 (B6ERB8_ALISL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Aminomethyltransferase RuleBase RU003981
EC=2.1.2.10 RuleBase RU003981

Gene names

Ordered Locus Names:

VSAL_II0496

Organism

Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238)) [Complete proteome] [HAMAP]

Taxonomic identifier

316275 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio

Protein attributes

Sequence length	372 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	The glycine cleavage system catalyzes the degradation of glycine By similarity. RuleBase RU003981
Catalytic activity	[Protein]-S(8)-aminomethyldihydrolipoyllysine + tetrahydrofolate = [protein]-dihydrolipoyllysine + 5,10-methylenetetrahydrofolate + NH3. SAAS SAAS006223 RuleBase RU003981
Subunit structure	The glycine cleavage system is composed of four proteins: P, T, L and H By similarity. RuleBase RU003981
Sequence similarities	Belongs to the GcvT family. RuleBase RU003980

Ontologies

Keywords
Molecular function	Aminotransferase SAAS SAAS006223 RuleBase RU003981 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycine catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	aminomethyltransferase activity Inferred from electronic annotation. Source: EC transaminase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B6ERB8 [UniParc]. Last modified November 25, 2008. Version 1. Checksum: 61C4550847AEA43C	FASTA	372	40,404
	10 20 30 40 50 60 MSEQLNKTAL FDMHVAAGAK MVPFAGYDMP VQYPLGVKKE HLHTRDSAGL FDVSHMGQLR 70 80 90 100 110 120 LKGDGAAAAL EALVPVDIID LPSQKQRYAF FTNEEGGIMD DLMVANFGDH LFVVVNAACK 130 140 150 160 170 180 EQDIAHLQAH LPKDVELEVI EDRALLALQG PKAADVLSRL QPAVANMLFM DSITIDINGI 190 200 210 220 230 240 ECYVSRSGYT GEDGYEVSVP NDKAAELAET LTSFEEVEWI GLGARDSLRL ECGLCLYGHD 250 260 270 280 290 300 LDTTTTPVEA SLLWGISKNR RADGERAGGF PGADIILKQI ETKDVNRKRV GLVGQTKAPV 310 320 330 340 350 360 REGCKLFDAN DTEIGVITSG TAGPTAGKPV SMGYLRTDLA VIGTEVFAEV RGKKLAMTVE 370 KMPFVPQRYY RG

References

[1]

"The complete genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238." Hjerde E., Lorentzen M.S., Holden M.T.G., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.-P., Thomson N.R. Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	FM178380 Genomic DNA. Translation: CAQ81250.1.
RefSeq	YP_002264826.1. NC_011313.1.
3D structure databases
ProteinModelPortal	B6ERB8.
ModBase	Search...
Protein-protein interaction databases
STRING	B6ERB8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6961910.
GenomeReviews	Gene locus VSAL_II0496 in contig FM178380_GR.
KEGG	vsa:VSAL_II0496.
PATRIC	20857768. VBIAliSal95923_3845.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG299834.
OMA	MPVQYPL.
ProtClustDB	CLSK910129.
Family and domain databases
InterPro	IPR013977. GCV_T_C. IPR006222. GCV_T_N. IPR006223. GcvT. [Graphical view]
KO	K00605.
PANTHER	PTHR13847:SF5. PTHR13847:SF5. 1 hit.
Pfam	PF01571. GCV_T. 1 hit. PF08669. GCV_T_C. 1 hit. [Graphical view]
PIRSF	PIRSF006487. GcvT. 1 hit.
TIGRFAMs	TIGR00528. GcvT. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B6ERB8_ALISL

Accession

Primary (citable) accession number: B6ERB8

Entry history

Integrated into UniProtKB/TrEMBL:	November 25, 2008
Last sequence update:	November 25, 2008
Last modified:	December 14, 2011
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)