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Protein

Purine nucleoside phosphorylase DeoD-type

Gene

deoD

Organism
Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei5Purine nucleoside; shared with dimeric partnerBy similarity1
Binding sitei21Phosphate; via amide nitrogenBy similarity1
Binding sitei25PhosphateBy similarity1
Binding sitei44Phosphate; shared with dimeric partnerBy similarity1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosyltransferase, Transferase

Names & Taxonomyi

Protein namesi
Recommended name:
Purine nucleoside phosphorylase DeoD-typeUniRule annotation (EC:2.4.2.1UniRule annotation)
Short name:
PNPUniRule annotation
Gene namesi
Name:deoDUniRule annotation
Ordered Locus Names:VSAL_II0457
OrganismiAliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))
Taxonomic identifieri316275 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
Proteomesi
  • UP000001730 Componenti: Chromosome 2

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10001861691 – 236Purine nucleoside phosphorylase DeoD-typeAdd BLAST236

Interactioni

Subunit structurei

Homohexamer.UniRule annotation

Protein-protein interaction databases

STRINGi316275.VSAL_II0457

Structurei

3D structure databases

ProteinModelPortaliB6ER81
SMRiB6ER81
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni88 – 91Phosphate bindingBy similarity4
Regioni180 – 182Purine nucleoside bindingBy similarity3
Regioni204 – 205Purine nucleoside bindingBy similarity2

Sequence similaritiesi

Belongs to the PNP/UDP phosphorylase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D3A Bacteria
COG0813 LUCA
HOGENOMiHOG000274896
KOiK03784
OMAiCSIYVHE
OrthoDBiPOG091H02M1

Family and domain databases

HAMAPiMF_01627 Pur_nucleosid_phosp, 1 hit
InterProiView protein in InterPro
IPR004402 DeoD-type
IPR000845 Nucleoside_phosphorylase_d
IPR035994 Nucleoside_phosphorylase_sf
PANTHERiPTHR43691:SF2 PTHR43691:SF2, 1 hit
PfamiView protein in Pfam
PF01048 PNP_UDP_1, 1 hit
SUPFAMiSSF53167 SSF53167, 1 hit
TIGRFAMsiTIGR00107 deoD, 1 hit

Sequencei

Sequence statusi: Complete.

B6ER81-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATPHINAQV GDFAETVLMP GDPLRAKFIA ENFLEDVTQV CDVRNMFGYT
60 70 80 90 100
GTYKGKKVSV MGHGMGIPSC CIYVHELIAE FGVKNIIRVG SCGAVHDDVK
110 120 130 140 150
LMDVVIGMGA STDSKVNRIR FNNHDFAAIA DFGLLETAVA QARKLNVPVK
160 170 180 190 200
VGNVFSADLF YSPETDLFDK MEKLGILGVD MEAAGIYRVA ADLGAKALTI
210 220 230
LTVSDHIKRG EKLSSEDRQK SFNDMMTVAL ETAIKL
Length:236
Mass (Da):25,653
Last modified:November 25, 2008 - v1
Checksum:i3FDA772E40250ED8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM178380 Genomic DNA Translation: CAQ81211.1
RefSeqiWP_012551795.1, NC_011313.1

Genome annotation databases

EnsemblBacteriaiCAQ81211; CAQ81211; VSAL_II0457
KEGGivsa:VSAL_II0457

Similar proteinsi

Entry informationi

Entry nameiDEOD_ALISL
AccessioniPrimary (citable) accession number: B6ER81
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: November 25, 2008
Last modified: April 25, 2018
This is version 58 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health