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B6EQL7 (GLGA_ALISL) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Glycogen synthase

EC=2.4.1.21
Alternative name(s):
Starch [bacterial glycogen] synthase
Gene names
Name:glgA
Ordered Locus Names:VSAL_II0239
OrganismAliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238)) [Complete proteome] [HAMAP]
Taxonomic identifier316275 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length482 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Synthesizes alpha-1,4-glucan chains using ADP-glucose By similarity. HAMAP-Rule MF_00484

Catalytic activity

ADP-glucose + (1,4-alpha-D-glucosyl)(n) = ADP + (1,4-alpha-D-glucosyl)(n+1). HAMAP-Rule MF_00484

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP-Rule MF_00484

Sequence similarities

Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.

Ontologies

Keywords
   Biological processGlycogen biosynthesis
   Molecular functionGlycosyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processglycogen biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionstarch synthase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 482482Glycogen synthase HAMAP-Rule MF_00484
PRO_1000126052

Sites

Binding site201ADP-glucose By similarity

Sequences

Sequence LengthMass (Da)Tools
B6EQL7 [UniParc].

Last modified November 25, 2008. Version 1.
Checksum: 33D0ECBC4FFCF2A5

FASTA48253,742
        10         20         30         40         50         60 
MATKTLSILF AASEVEGLIK SGGLADVAKA LPKSLKDLGH EIHIAMPAYS AIPERDDAEV 

        70         80         90        100        110        120 
LLSSTLEHWP HTPYQVRSLS VEGITVLGIE CADYFDRAEM YAENNQAYAD NGERFAFFSA 

       130        140        150        160        170        180 
ACLDMLPKLK IKPDVIHAND WHTGLLPYLL KKRYANDAYF SQVRSVLSVH NAVFKGIFHY 

       190        200        210        220        230        240 
DDIGCLSEFK THYVPEAAVS HTHISMLKAG VQCADKINAV SPTYAKELLT ELGSHGMASD 

       250        260        270        280        290        300 
FQAREPDLFG ILNGCDYSEW SPETDTFIPK QFKANRISMV RGKKVCKAAL QEEVGLPQKE 

       310        320        330        340        350        360 
VAMYGMVCRL TNQKGIHYLL PILEQFLKHD LQIVIVGTGD PVLAAQLTEI AAIHSDKFAF 

       370        380        390        400        410        420 
VEAYSNKLAH WIEASSDFFL MPSEFEPCGL NQIYSMSYGA LPIVRAVGGL KDSVIDYDSD 

       430        440        450        460        470        480 
NENATGFSFI NPEPTELLLV LMRSLLLYAQ DLNEVKRIQL HAMKQNFSWS DAAEKYVEMY 


LD 

« Hide

References

[1]"The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: LFI1238.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FM178380 Genomic DNA. Translation: CAQ80993.1.
RefSeqYP_002264589.1. NC_011313.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316275.VSAL_II0239.

Protein family/group databases

CAZyGT5. Glycosyltransferase Family 5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ80993; CAQ80993; VSAL_II0239.
GeneID6961703.
KEGGvsa:VSAL_II0239.
PATRIC20857222. VBIAliSal95923_3575.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0297.
HOGENOMHOG000294940.
KOK00703.
OMACRLTEQK.
OrthoDBEOG6JTC6Z.
ProtClustDBPRK00654.

Enzyme and pathway databases

UniPathwayUPA00164.

Family and domain databases

HAMAPMF_00484. Glycogen_synth.
InterProIPR001296. Glyco_trans_1.
IPR011835. Glycogen/starch_synth.
IPR013534. Starch_synth_cat_dom.
[Graphical view]
PfamPF08323. Glyco_transf_5. 1 hit.
PF00534. Glycos_transf_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR02095. glgA. 1 hit.
ProtoNetSearch...

Entry information

Entry nameGLGA_ALISL
AccessionPrimary (citable) accession number: B6EQL7
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: November 25, 2008
Last modified: February 19, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways