Reviewed, UniProtKB/Swiss-Prot B6EQL7 (GLGA_ALISL)

Names and origin

Protein names

Recommended name:
    Glycogen synthase
    EC=2.4.1.21
Alternative name(s):
    Starch [bacterial glycogen] synthase

Gene names

Name:	glgA
Ordered Locus Names:	VSAL_II0239

Organism

Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238)) [Complete proteome] [HAMAP]

Taxonomic identifier

316275 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio

Protein attributes

Sequence length	482 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Synthesizes alpha-1,4-glucan chains using ADP-glucose By similarity.
Catalytic activity	ADP-glucose + (1,4-alpha-D-glucosyl)(n) = ADP + (1,4-alpha-D-glucosyl)(n+1). HAMAP MF_00484
Pathway	Glycan biosynthesis; glycogen biosynthesis. HAMAP MF_00484
Sequence similarities	Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.

Ontologies

Keywords
Biological process	Glycogen biosynthesis
Molecular function	Glycosyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycogen biosynthetic process Inferred from electronic annotation. Source: HAMAP
Molecular function	starch synthase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 482	482	Glycogen synthase HAMAP MF_00484		PRO_1000126052
Sites
	Binding site	20	1	ADP-glucose By similarity

Sequences

	Sequence		Length	Mass (Da)
	B6EQL7-1 [UniParc]. Last modified November 25, 2008. Version 1. Checksum: 33D0ECBC4FFCF2A5	FASTA	482	53,742
	10 20 30 40 50 60 MATKTLSILF AASEVEGLIK SGGLADVAKA LPKSLKDLGH EIHIAMPAYS AIPERDDAEV 70 80 90 100 110 120 LLSSTLEHWP HTPYQVRSLS VEGITVLGIE CADYFDRAEM YAENNQAYAD NGERFAFFSA 130 140 150 160 170 180 ACLDMLPKLK IKPDVIHAND WHTGLLPYLL KKRYANDAYF SQVRSVLSVH NAVFKGIFHY 190 200 210 220 230 240 DDIGCLSEFK THYVPEAAVS HTHISMLKAG VQCADKINAV SPTYAKELLT ELGSHGMASD 250 260 270 280 290 300 FQAREPDLFG ILNGCDYSEW SPETDTFIPK QFKANRISMV RGKKVCKAAL QEEVGLPQKE 310 320 330 340 350 360 VAMYGMVCRL TNQKGIHYLL PILEQFLKHD LQIVIVGTGD PVLAAQLTEI AAIHSDKFAF 370 380 390 400 410 420 VEAYSNKLAH WIEASSDFFL MPSEFEPCGL NQIYSMSYGA LPIVRAVGGL KDSVIDYDSD 430 440 450 460 470 480 NENATGFSFI NPEPTELLLV LMRSLLLYAQ DLNEVKRIQL HAMKQNFSWS DAAEKYVEMY LD

References

[1]

"The complete genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238." Hjerde E., Lorentzen M.S., Holden M.T.G., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.-P., Thomson N.R. Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	FM178380 Genomic DNA. Translation: CAQ80993.1.
RefSeq	YP_002264589.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	6961703.
GenomeReviews	Gene locus VSAL_II0239 in contig FM178380_GR.
KEGG	vsa:VSAL_II0239.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	CADKINA.
Family and domain databases
HAMAP	MF_00484. [Tree]
InterPro	IPR011835. GlgA. IPR001296. Glyco_trans_1. IPR013534. Glyco_transf_5. [Graphical view]
Pfam	PF08323. Glyco_transf_5. 1 hit. PF00534. Glycos_transf_1. 1 hit. [Graphical view]
TIGRFAMs	TIGR02095. glgA. 1 hit.
ProtoNet	Search...

Entry information

Entry name

GLGA_ALISL

Accession

Primary (citable) accession number: B6EQL7

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	November 25, 2008
Last modified:	November 3, 2009
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)