Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Phosphoenolpyruvate carboxylase

Gene

ppc

Organism
Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.UniRule annotation

Catalytic activityi

Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-.UniRule annotation

Cofactori

Mg2+UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei138 – 1381UniRule annotation
Active sitei543 – 5431UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. phosphoenolpyruvate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. carbon fixation Source: UniProtKB-HAMAP
  2. oxaloacetate metabolic process Source: UniProtKB-HAMAP
  3. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Biological processi

Carbon dioxide fixation

Keywords - Ligandi

Magnesium

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphoenolpyruvate carboxylaseUniRule annotation (EC:4.1.1.31UniRule annotation)
Short name:
PEPCUniRule annotation
Short name:
PEPCaseUniRule annotation
Gene namesi
Name:ppcUniRule annotation
Ordered Locus Names:VSAL_I2754
OrganismiAliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))
Taxonomic identifieri316275 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001730: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 876876Phosphoenolpyruvate carboxylasePRO_1000129824Add
BLAST

Proteomic databases

PRIDEiB6EMN4.

Interactioni

Protein-protein interaction databases

STRINGi316275.VSAL_I2754.

Family & Domainsi

Sequence similaritiesi

Belongs to the PEPCase type 1 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG2352.
HOGENOMiHOG000238648.
KOiK01595.
OMAiCGMGVIA.
OrthoDBiEOG6TJ7T8.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B6EMN4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNEKYAALKS NVSMLGHLLG NTIRDAHGEE LLAKVETIRK LSKTARAGSD
60 70 80 90 100
NDRNALIEEI KSLPNDQLTP VARAFSQFLN LTNMAEQYHT ISRHCEEHVC
110 120 130 140 150
EPDAISSLFS KLSQNNISKL DTVQAVRELN IELVLTAHPT EIARRTMINK
160 170 180 190 200
LVKINECLSK LELSDISFSE REKTERRLEQ LIAQAWHSDV IRQERPTPLD
210 220 230 240 250
EAKWGFAVVE NSLWQGIPDF LREFDQRLEN HLGEGLPIDA RPVHMSSWMG
260 270 280 290 300
GDRDGNPFVT HTITREVMLL SRWKAADLYL KDVNELISEL SMVKCTDEVR
310 320 330 340 350
KLAGDQHEPY RAILKQLRTL LNDTLENLDA QMKGELTNNK PILRNAEQLW
360 370 380 390 400
LPLHACYQSL HACGMGIIAE GSLLDTLRRV KAFGAHLVRL DIRQESTRHS
410 420 430 440 450
NVLSELTRYL GIGDYDQWSE QDKISFLVNE LSSKRPLLPR DWTPTAEVQE
460 470 480 490 500
VIDTCKIVAE QSKEALGSYV ISMARTASDV LAVHLLLQEA GCPFRMDVCP
510 520 530 540 550
LFETLDDLNR SKEVMEQLFS IDWYRGFIQN HQMVMIGYSD SAKDAGVMSA
560 570 580 590 600
GWAQYSAMEA LVDVCEKESI ELTLFHGRGG TIGRGGAPAH AALLSQPPKS
610 620 630 640 650
LKGGLRVTEQ GEMIRFKLGL PEVAVNSFNL YASAILEANL LPPPEPKQEW
660 670 680 690 700
RDLMEVLSEV SCEAYRNIVR GEKDFVPYFR AATPELELGK LPLGSRPAKR
710 720 730 740 750
NPNGGVESLR AIPWIFSWSQ NRLVLPAWLG AGEAIQYSID KGHQELLEEM
760 770 780 790 800
CREWPFFSTR LGMLEMVYTK CNPQMSEYYD QRLTDKSLWP LGVRLRNQLQ
810 820 830 840 850
ADIKAVLNVE NSDHLMESDP WGSESIRLRN IYVDPLNMLQ AELLYRTRQQ
860 870
EETSPELEEA LMVTIAGIAA GMRNTG
Length:876
Mass (Da):99,129
Last modified:November 25, 2008 - v1
Checksum:iD556F91F1E5A96E9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM178379 Genomic DNA. Translation: CAQ80438.1.
RefSeqiWP_012551194.1. NC_011312.1.
YP_002264090.1. NC_011312.1.

Genome annotation databases

EnsemblBacteriaiCAQ80438; CAQ80438; VSAL_I2754.
GeneIDi6987908.
KEGGivsa:VSAL_I2754.
PATRICi20855998. VBIAliSal95923_2987.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM178379 Genomic DNA. Translation: CAQ80438.1.
RefSeqiWP_012551194.1. NC_011312.1.
YP_002264090.1. NC_011312.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316275.VSAL_I2754.

Proteomic databases

PRIDEiB6EMN4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAQ80438; CAQ80438; VSAL_I2754.
GeneIDi6987908.
KEGGivsa:VSAL_I2754.
PATRICi20855998. VBIAliSal95923_2987.

Phylogenomic databases

eggNOGiCOG2352.
HOGENOMiHOG000238648.
KOiK01595.
OMAiCGMGVIA.
OrthoDBiEOG6TJ7T8.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
    Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
    BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LFI1238.

Entry informationi

Entry nameiCAPP_ALISL
AccessioniPrimary (citable) accession number: B6EMN4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: November 25, 2008
Last modified: January 7, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.