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B6EMN4 (CAPP_ALISL) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Phosphoenolpyruvate carboxylase

Short name=PEPC
Short name=PEPCase
EC=4.1.1.31
Gene names
Name:ppc
Ordered Locus Names:VSAL_I2754
OrganismAliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238)) [Complete proteome] [HAMAP]
Taxonomic identifier316275 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length876 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle By similarity. HAMAP-Rule MF_00595

Catalytic activity

Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-. HAMAP-Rule MF_00595

Cofactor

Magnesium By similarity. HAMAP-Rule MF_00595

Sequence similarities

Belongs to the PEPCase type 1 family.

Ontologies

Keywords
   Biological processCarbon dioxide fixation
   LigandMagnesium
   Molecular functionLyase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

oxaloacetate metabolic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

tricarboxylic acid cycle

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

phosphoenolpyruvate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 876876Phosphoenolpyruvate carboxylase HAMAP-Rule MF_00595
PRO_1000129824

Sites

Active site1381 By similarity
Active site5431 By similarity

Sequences

Sequence LengthMass (Da)Tools
B6EMN4 [UniParc].

Last modified November 25, 2008. Version 1.
Checksum: D556F91F1E5A96E9

FASTA87699,129
        10         20         30         40         50         60 
MNEKYAALKS NVSMLGHLLG NTIRDAHGEE LLAKVETIRK LSKTARAGSD NDRNALIEEI 

        70         80         90        100        110        120 
KSLPNDQLTP VARAFSQFLN LTNMAEQYHT ISRHCEEHVC EPDAISSLFS KLSQNNISKL 

       130        140        150        160        170        180 
DTVQAVRELN IELVLTAHPT EIARRTMINK LVKINECLSK LELSDISFSE REKTERRLEQ 

       190        200        210        220        230        240 
LIAQAWHSDV IRQERPTPLD EAKWGFAVVE NSLWQGIPDF LREFDQRLEN HLGEGLPIDA 

       250        260        270        280        290        300 
RPVHMSSWMG GDRDGNPFVT HTITREVMLL SRWKAADLYL KDVNELISEL SMVKCTDEVR 

       310        320        330        340        350        360 
KLAGDQHEPY RAILKQLRTL LNDTLENLDA QMKGELTNNK PILRNAEQLW LPLHACYQSL 

       370        380        390        400        410        420 
HACGMGIIAE GSLLDTLRRV KAFGAHLVRL DIRQESTRHS NVLSELTRYL GIGDYDQWSE 

       430        440        450        460        470        480 
QDKISFLVNE LSSKRPLLPR DWTPTAEVQE VIDTCKIVAE QSKEALGSYV ISMARTASDV 

       490        500        510        520        530        540 
LAVHLLLQEA GCPFRMDVCP LFETLDDLNR SKEVMEQLFS IDWYRGFIQN HQMVMIGYSD 

       550        560        570        580        590        600 
SAKDAGVMSA GWAQYSAMEA LVDVCEKESI ELTLFHGRGG TIGRGGAPAH AALLSQPPKS 

       610        620        630        640        650        660 
LKGGLRVTEQ GEMIRFKLGL PEVAVNSFNL YASAILEANL LPPPEPKQEW RDLMEVLSEV 

       670        680        690        700        710        720 
SCEAYRNIVR GEKDFVPYFR AATPELELGK LPLGSRPAKR NPNGGVESLR AIPWIFSWSQ 

       730        740        750        760        770        780 
NRLVLPAWLG AGEAIQYSID KGHQELLEEM CREWPFFSTR LGMLEMVYTK CNPQMSEYYD 

       790        800        810        820        830        840 
QRLTDKSLWP LGVRLRNQLQ ADIKAVLNVE NSDHLMESDP WGSESIRLRN IYVDPLNMLQ 

       850        860        870 
AELLYRTRQQ EETSPELEEA LMVTIAGIAA GMRNTG 

« Hide

References

[1]"The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: LFI1238.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FM178379 Genomic DNA. Translation: CAQ80438.1.
RefSeqYP_002264090.1. NC_011312.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316275.VSAL_I2754.

Proteomic databases

PRIDEB6EMN4.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ80438; CAQ80438; VSAL_I2754.
GeneID6987908.
KEGGvsa:VSAL_I2754.
PATRIC20855998. VBIAliSal95923_2987.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2352.
HOGENOMHOG000238648.
KOK01595.
OMAAIPWVFG.
OrthoDBEOG6TJ7T8.
ProtClustDBPRK00009.

Family and domain databases

HAMAPMF_00595. PEPcase_type1.
InterProIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSPR00150. PEPCARBXLASE.
SUPFAMSSF51621. SSF51621. 1 hit.
PROSITEPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCAPP_ALISL
AccessionPrimary (citable) accession number: B6EMN4
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: November 25, 2008
Last modified: February 19, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families