B6EKF6 (B6EKF6_ALISL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Cystathionine beta-lyase EMBL CAQ79040.1
EC=4.4.1.8 EMBL CAQ79040.1

Gene names

Name:	metC EMBL CAQ79040.1
Ordered Locus Names:	VSAL_I1355

Organism

Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238)) [Complete proteome] [HAMAP] EMBL CAQ79040.1

Taxonomic identifier

316275 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio

Protein attributes

Sequence length	396 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL CAQ79040.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cellular amino acid metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	cystathionine beta-lyase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B6EKF6 [UniParc]. Last modified November 25, 2008. Version 1. Checksum: FDFCBE8C9C1BE8C6	FASTA	396	43,896
	10 20 30 40 50 60 MSDKLDTKYV TAGRSKKWTK GVVNPPVQRA STVVFNSVAE KNHAMVNRAK QTLFYGRRGT 70 80 90 100 110 120 ETHFALQDAM VELEGGAGCA LYPCGTAAIA NAILCFVKTG DHILMVDGCY EPTRDYCDTM 130 140 150 160 170 180 LKKMGIETTY YDPMIGEGIR DLIKPNTTVL FTESPCSITM EVQDVPLLAR IAHESDIVVM 190 200 210 220 230 240 LDNTWAAGVN FSPFDHGVDI SIQAATKYIV GHSDVMLGTA VANEKHWDQL REQSYLMGQC 250 260 270 280 290 300 ISPDDAYLAM RGLRTMGVRL KQHEKSSIKI ANWLAEHPLV DHVRHPALES CLGNDIYQRD 310 320 330 340 350 360 FTGCNGLFSF VLKQSDTKAT TALLDSMTHF NMGYSWGGFE SLILANEPKS FNALRTVAHP 370 380 390 NFEGTLIRLH IGLEDIDDLI EDLEEGLALY QETLSA

References

[1]

"The complete genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238." Hjerde E., Lorentzen M.S., Holden M.T.G., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.-P., Thomson N.R. Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	FM178379 Genomic DNA. Translation: CAQ79040.1.
RefSeq	YP_002262812.1. NC_011312.1.
3D structure databases
ProteinModelPortal	B6EKF6.
ModBase	Search...
Protein-protein interaction databases
STRING	B6EKF6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6987026.
GenomeReviews	Gene locus VSAL_I1355 in contig FM178379_GR.
KEGG	vsa:VSAL_I1355.
PATRIC	20852972. VBIAliSal95923_1507.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG754729.
OMA	REQSYLM.
ProtClustDB	PRK09028.
Family and domain databases
InterPro	IPR000277. Cys/Met-Metab_PyrdxlP-dep_enz. IPR006233. Cys_b_lyase_bac. IPR015424. PyrdxlP-dep_Trfase_major_dom. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Gene3D	G3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit. G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KO	K01760.
PANTHER	PTHR11808:SF8. Cys_b_lyase_bac. 1 hit. PTHR11808. Cys_Met_Meta_PP. 1 hit.
Pfam	PF01053. Cys_Met_Meta_PP. 1 hit. [Graphical view]
PIRSF	PIRSF001434. CGS. 1 hit.
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01324. Cysta_beta_ly_B. 1 hit.
PROSITE	PS00868. CYS_MET_METAB_PP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B6EKF6_ALISL

Accession

Primary (citable) accession number: B6EKF6

Entry history

Integrated into UniProtKB/TrEMBL:	November 25, 2008
Last sequence update:	November 25, 2008
Last modified:	December 14, 2011
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)