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B6EK24

- B6EK24_ALISL

UniProt

B6EK24 - B6EK24_ALISL

Protein

Alpha-amylase

Gene

VSAL_I1289

Organism
Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (25 Nov 2008)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. cation binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    GlycosidaseUniRule annotation, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolismUniRule annotation

    Protein family/group databases

    CAZyiGH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:VSAL_I1289Imported
    OrganismiAliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))Imported
    Taxonomic identifieri316275 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
    ProteomesiUP000001730: Chromosome 1

    Interactioni

    Protein-protein interaction databases

    STRINGi316275.VSAL_I1289.

    Structurei

    3D structure databases

    ProteinModelPortaliB6EK24.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0366.
    HOGENOMiHOG000274290.
    KOiK01176.
    OMAiWQRYQPQ.
    OrthoDBiEOG6RZB1B.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PRINTSiPR00110. ALPHAAMYLASE.
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B6EK24-1 [UniParc]FASTAAdd to Basket

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    MSQGMAGQLH NIPAVSNVIL HAFDWTYQSI AEQAEQIAAL GYRSVLVSPA    50
    MKSLQLPSGT QWWQRYQPQD YRLIDNPLGN TSDFKHMIER LAEFNLWVYV 100
    DVVFNHMANE SDIRADLQYP NRWDREDYEK DPIKYHALTL FGDLSEPLFT 150
    EPDFVDAFGI ENWNDKWEVQ NGRISGGPHD PGLPTLIDNE HVVEQQRAYL 200
    LALKSMGVKG FRIDAAKHMS LEHLNKVWTD DITNDVHIFG EIITDGGATK 250
    EEYETFLSPY LMGTTLGAYD FPLFNILYQA FEKKGSLTSL IDPYCYGLAL 300
    SPLRAITFAI THDIPNNQVF KSLVMSEHNE WLAYAYLFGR EGGIPLVYSD 350
    LDTSGITNSF GSPRWKNAWK EEKMSGLIHF HHRMYGEGQT LIEASDDHLV 400
    FARGDQGIVA LNKSNKNIEV SMSSDSEWRE FSSNQLCQKK EGVLVFSIPK 450
    YSYLLLCH 458
    Length:458
    Mass (Da):52,258
    Last modified:November 25, 2008 - v1
    Checksum:i384AE9711EFE0E49
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FM178379 Genomic DNA. Translation: CAQ78974.1.
    RefSeqiWP_012550003.1. NC_011312.1.
    YP_002262752.1. NC_011312.1.

    Genome annotation databases

    EnsemblBacteriaiCAQ78974; CAQ78974; VSAL_I1289.
    GeneIDi6986969.
    KEGGivsa:VSAL_I1289.
    PATRICi20852829. VBIAliSal95923_1436.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FM178379 Genomic DNA. Translation: CAQ78974.1 .
    RefSeqi WP_012550003.1. NC_011312.1.
    YP_002262752.1. NC_011312.1.

    3D structure databases

    ProteinModelPortali B6EK24.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 316275.VSAL_I1289.

    Protein family/group databases

    CAZyi GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAQ78974 ; CAQ78974 ; VSAL_I1289 .
    GeneIDi 6986969.
    KEGGi vsa:VSAL_I1289.
    PATRICi 20852829. VBIAliSal95923_1436.

    Phylogenomic databases

    eggNOGi COG0366.
    HOGENOMi HOG000274290.
    KOi K01176.
    OMAi WQRYQPQ.
    OrthoDBi EOG6RZB1B.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PRINTSi PR00110. ALPHAAMYLASE.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
      Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
      BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: LFI1238Imported.

    Entry informationi

    Entry nameiB6EK24_ALISL
    AccessioniPrimary (citable) accession number: B6EK24
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 25, 2008
    Last sequence update: November 25, 2008
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3