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B6EK24

- B6EK24_ALISL

UniProt

B6EK24 - B6EK24_ALISL

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Protein
Alpha-amylase
Gene
VSAL_I1289
Organism
Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. cation binding Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:VSAL_I1289Imported
OrganismiAliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))Imported
Taxonomic identifieri316275 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001730: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi316275.VSAL_I1289.

Structurei

3D structure databases

ProteinModelPortaliB6EK24.

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000274290.
KOiK01176.
OMAiWQRYQPQ.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

B6EK24-1 [UniParc]FASTAAdd to Basket

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MSQGMAGQLH NIPAVSNVIL HAFDWTYQSI AEQAEQIAAL GYRSVLVSPA    50
MKSLQLPSGT QWWQRYQPQD YRLIDNPLGN TSDFKHMIER LAEFNLWVYV 100
DVVFNHMANE SDIRADLQYP NRWDREDYEK DPIKYHALTL FGDLSEPLFT 150
EPDFVDAFGI ENWNDKWEVQ NGRISGGPHD PGLPTLIDNE HVVEQQRAYL 200
LALKSMGVKG FRIDAAKHMS LEHLNKVWTD DITNDVHIFG EIITDGGATK 250
EEYETFLSPY LMGTTLGAYD FPLFNILYQA FEKKGSLTSL IDPYCYGLAL 300
SPLRAITFAI THDIPNNQVF KSLVMSEHNE WLAYAYLFGR EGGIPLVYSD 350
LDTSGITNSF GSPRWKNAWK EEKMSGLIHF HHRMYGEGQT LIEASDDHLV 400
FARGDQGIVA LNKSNKNIEV SMSSDSEWRE FSSNQLCQKK EGVLVFSIPK 450
YSYLLLCH 458
Length:458
Mass (Da):52,258
Last modified:November 25, 2008 - v1
Checksum:i384AE9711EFE0E49
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FM178379 Genomic DNA. Translation: CAQ78974.1.
RefSeqiWP_012550003.1. NC_011312.1.
YP_002262752.1. NC_011312.1.

Genome annotation databases

EnsemblBacteriaiCAQ78974; CAQ78974; VSAL_I1289.
GeneIDi6986969.
KEGGivsa:VSAL_I1289.
PATRICi20852829. VBIAliSal95923_1436.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FM178379 Genomic DNA. Translation: CAQ78974.1 .
RefSeqi WP_012550003.1. NC_011312.1.
YP_002262752.1. NC_011312.1.

3D structure databases

ProteinModelPortali B6EK24.
ModBasei Search...

Protein-protein interaction databases

STRINGi 316275.VSAL_I1289.

Protein family/group databases

CAZyi GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAQ78974 ; CAQ78974 ; VSAL_I1289 .
GeneIDi 6986969.
KEGGi vsa:VSAL_I1289.
PATRICi 20852829. VBIAliSal95923_1436.

Phylogenomic databases

eggNOGi COG0366.
HOGENOMi HOG000274290.
KOi K01176.
OMAi WQRYQPQ.
OrthoDBi EOG6RZB1B.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
PRINTSi PR00110. ALPHAAMYLASE.
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
    Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
    BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LFI1238Imported.

Entry informationi

Entry nameiB6EK24_ALISL
AccessioniPrimary (citable) accession number: B6EK24
Entry historyi
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: September 3, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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