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Protein

Alpha-amylase

Gene

VSAL_I1289

Organism
Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:VSAL_I1289Imported
OrganismiAliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))Imported
Taxonomic identifieri316275 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001730: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi316275.VSAL_I1289.

Structurei

3D structure databases

ProteinModelPortaliB6EK24.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000274290.
KOiK01176.
OMAiNEWLAYA.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

B6EK24-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSQGMAGQLH NIPAVSNVIL HAFDWTYQSI AEQAEQIAAL GYRSVLVSPA
60 70 80 90 100
MKSLQLPSGT QWWQRYQPQD YRLIDNPLGN TSDFKHMIER LAEFNLWVYV
110 120 130 140 150
DVVFNHMANE SDIRADLQYP NRWDREDYEK DPIKYHALTL FGDLSEPLFT
160 170 180 190 200
EPDFVDAFGI ENWNDKWEVQ NGRISGGPHD PGLPTLIDNE HVVEQQRAYL
210 220 230 240 250
LALKSMGVKG FRIDAAKHMS LEHLNKVWTD DITNDVHIFG EIITDGGATK
260 270 280 290 300
EEYETFLSPY LMGTTLGAYD FPLFNILYQA FEKKGSLTSL IDPYCYGLAL
310 320 330 340 350
SPLRAITFAI THDIPNNQVF KSLVMSEHNE WLAYAYLFGR EGGIPLVYSD
360 370 380 390 400
LDTSGITNSF GSPRWKNAWK EEKMSGLIHF HHRMYGEGQT LIEASDDHLV
410 420 430 440 450
FARGDQGIVA LNKSNKNIEV SMSSDSEWRE FSSNQLCQKK EGVLVFSIPK

YSYLLLCH
Length:458
Mass (Da):52,258
Last modified:November 25, 2008 - v1
Checksum:i384AE9711EFE0E49
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM178379 Genomic DNA. Translation: CAQ78974.1.
RefSeqiYP_002262752.1. NC_011312.1.

Genome annotation databases

EnsemblBacteriaiCAQ78974; CAQ78974; VSAL_I1289.
GeneIDi6986969.
KEGGivsa:VSAL_I1289.
PATRICi20852829. VBIAliSal95923_1436.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM178379 Genomic DNA. Translation: CAQ78974.1.
RefSeqiYP_002262752.1. NC_011312.1.

3D structure databases

ProteinModelPortaliB6EK24.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316275.VSAL_I1289.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAQ78974; CAQ78974; VSAL_I1289.
GeneIDi6986969.
KEGGivsa:VSAL_I1289.
PATRICi20852829. VBIAliSal95923_1436.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000274290.
KOiK01176.
OMAiNEWLAYA.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
    Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
    BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LFI1238Imported.

Entry informationi

Entry nameiB6EK24_ALISL
AccessioniPrimary (citable) accession number: B6EK24
Entry historyi
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: January 7, 2015
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.