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B6EK24 (B6EK24_ALISL) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length458 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units. RuleBase RU361134

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Keywords
   Biological processCarbohydrate metabolism RuleBase RU361134
   Molecular functionGlycosidase RuleBase RU361134
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B6EK24 [UniParc].

Last modified November 25, 2008. Version 1.
Checksum: 384AE9711EFE0E49

FASTA45852,258
        10         20         30         40         50         60 
MSQGMAGQLH NIPAVSNVIL HAFDWTYQSI AEQAEQIAAL GYRSVLVSPA MKSLQLPSGT 

        70         80         90        100        110        120 
QWWQRYQPQD YRLIDNPLGN TSDFKHMIER LAEFNLWVYV DVVFNHMANE SDIRADLQYP 

       130        140        150        160        170        180 
NRWDREDYEK DPIKYHALTL FGDLSEPLFT EPDFVDAFGI ENWNDKWEVQ NGRISGGPHD 

       190        200        210        220        230        240 
PGLPTLIDNE HVVEQQRAYL LALKSMGVKG FRIDAAKHMS LEHLNKVWTD DITNDVHIFG 

       250        260        270        280        290        300 
EIITDGGATK EEYETFLSPY LMGTTLGAYD FPLFNILYQA FEKKGSLTSL IDPYCYGLAL 

       310        320        330        340        350        360 
SPLRAITFAI THDIPNNQVF KSLVMSEHNE WLAYAYLFGR EGGIPLVYSD LDTSGITNSF 

       370        380        390        400        410        420 
GSPRWKNAWK EEKMSGLIHF HHRMYGEGQT LIEASDDHLV FARGDQGIVA LNKSNKNIEV 

       430        440        450 
SMSSDSEWRE FSSNQLCQKK EGVLVFSIPK YSYLLLCH 

« Hide

References

[1]"The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: LFI1238 EMBL CAQ78974.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FM178379 Genomic DNA. Translation: CAQ78974.1.
RefSeqYP_002262752.1. NC_011312.1.

3D structure databases

ProteinModelPortalB6EK24.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316275.VSAL_I1289.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ78974; CAQ78974; VSAL_I1289.
GeneID6986969.
KEGGvsa:VSAL_I1289.
PATRIC20852829. VBIAliSal95923_1436.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000274290.
KOK01176.
OMAWQRYQPQ.
OrthoDBEOG6RZB1B.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB6EK24_ALISL
AccessionPrimary (citable) accession number: B6EK24
Entry history
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: July 9, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)