Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

B6EJL8

- B6EJL8_ALISL

UniProt

B6EJL8 - B6EJL8_ALISL

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Glutamate decarboxylase

Gene

gadB

Organism
Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.

Cofactori

Note: Pyridoxal phosphate.UniRule annotation

GO - Molecular functioni

  1. glutamate decarboxylase activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. glutamate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Name:gadBImported
Ordered Locus Names:VSAL_I1197Imported
OrganismiAliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))Imported
Taxonomic identifieri316275 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001730: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi316275.VSAL_I1197.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
KOiK01580.
OMAiPTFQINF.
OrthoDBiEOG6TFCPW.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

B6EJL8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPLHSKDTVR DDLLDDVYSS TDLSLSMPKY KMPEHEHDPR HAYQVVHDEL
60 70 80 90 100
MMDGNSRQNL ATFCQTWVED EVHKLMDECI DKNMIDKDEY PQTAELEARC
110 120 130 140 150
VHMLADLWNS PDAENTLGCS TTGSSEAAML GGMALKWAWR EKMKKLGKPT
160 170 180 190 200
DKPNMICGPV QVCWHKFARY WDIELREIPM EGDRLIMTPE EVIKRCDENT
210 220 230 240 250
IGVVPTLGVT FTCQYEPVKA VHEALDKLQE ETGLDIPMHI DAASGGFLAP
260 270 280 290 300
FCDPELEWDF RLPRVKSINA SGHKFGLSPL GVGWVIWRDA SALHEDLIFN
310 320 330 340 350
VNYLGGNMPT FALNFSRPGG QIVAQYYNFL RLGKEGYRKI HQACYDTAVY
360 370 380 390 400
LSAEIEKMGM FDIIYDGKGG IPAMSWSLKE GVNPGFNLFD LSDRIRSRGW
410 420 430 440 450
QIAAYAMPPK REDLVIMRIL VRHGFSRDQA DLLVADLKHC IEFFDKHPIS
460
HGSDEVESSG FNHG
Length:464
Mass (Da):52,653
Last modified:November 25, 2008 - v1
Checksum:i635C9A3B4469B134
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM178379 Genomic DNA. Translation: CAQ78882.1.
RefSeqiYP_002262671.1. NC_011312.1.

Genome annotation databases

EnsemblBacteriaiCAQ78882; CAQ78882; VSAL_I1197.
GeneIDi6986887.
KEGGivsa:VSAL_I1197.
PATRICi20852630. VBIAliSal95923_1339.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM178379 Genomic DNA. Translation: CAQ78882.1 .
RefSeqi YP_002262671.1. NC_011312.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316275.VSAL_I1197.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAQ78882 ; CAQ78882 ; VSAL_I1197 .
GeneIDi 6986887.
KEGGi vsa:VSAL_I1197.
PATRICi 20852630. VBIAliSal95923_1339.

Phylogenomic databases

eggNOGi COG0076.
HOGENOMi HOG000070228.
KOi K01580.
OMAi PTFQINF.
OrthoDBi EOG6TFCPW.

Family and domain databases

Gene3Di 3.40.640.10. 1 hit.
InterProi IPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view ]
PANTHERi PTHR11999:SF1. PTHR11999:SF1. 1 hit.
Pfami PF00282. Pyridoxal_deC. 1 hit.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 1 hit.
TIGRFAMsi TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
    Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
    BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LFI1238Imported.

Entry informationi

Entry nameiB6EJL8_ALISL
AccessioniPrimary (citable) accession number: B6EJL8
Entry historyi
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: November 26, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3