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B6EJL8 (B6EJL8_ALISL) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length464 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Sequences

Sequence LengthMass (Da)Tools
B6EJL8 [UniParc].

Last modified November 25, 2008. Version 1.
Checksum: 635C9A3B4469B134

FASTA46452,653
        10         20         30         40         50         60 
MPLHSKDTVR DDLLDDVYSS TDLSLSMPKY KMPEHEHDPR HAYQVVHDEL MMDGNSRQNL 

        70         80         90        100        110        120 
ATFCQTWVED EVHKLMDECI DKNMIDKDEY PQTAELEARC VHMLADLWNS PDAENTLGCS 

       130        140        150        160        170        180 
TTGSSEAAML GGMALKWAWR EKMKKLGKPT DKPNMICGPV QVCWHKFARY WDIELREIPM 

       190        200        210        220        230        240 
EGDRLIMTPE EVIKRCDENT IGVVPTLGVT FTCQYEPVKA VHEALDKLQE ETGLDIPMHI 

       250        260        270        280        290        300 
DAASGGFLAP FCDPELEWDF RLPRVKSINA SGHKFGLSPL GVGWVIWRDA SALHEDLIFN 

       310        320        330        340        350        360 
VNYLGGNMPT FALNFSRPGG QIVAQYYNFL RLGKEGYRKI HQACYDTAVY LSAEIEKMGM 

       370        380        390        400        410        420 
FDIIYDGKGG IPAMSWSLKE GVNPGFNLFD LSDRIRSRGW QIAAYAMPPK REDLVIMRIL 

       430        440        450        460 
VRHGFSRDQA DLLVADLKHC IEFFDKHPIS HGSDEVESSG FNHG 

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References

[1]"The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: LFI1238 EMBL CAQ78882.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FM178379 Genomic DNA. Translation: CAQ78882.1.
RefSeqYP_002262671.1. NC_011312.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316275.VSAL_I1197.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ78882; CAQ78882; VSAL_I1197.
GeneID6986887.
KEGGvsa:VSAL_I1197.
PATRIC20852630. VBIAliSal95923_1339.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000070228.
KOK01580.
OMAIADLWNA.
OrthoDBEOG6TFCPW.
ProtClustDBCLSK928485.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB6EJL8_ALISL
AccessionPrimary (citable) accession number: B6EJL8
Entry history
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: November 13, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)