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B6EIM0 (B6EIM0_ALISL) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=1.1.1.42 EMBL CAQ79890.1
Gene names
Name:icd EMBL CAQ79890.1
Ordered Locus Names:VSAL_I2205 EMBL CAQ79890.1
OrganismAliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238)) [Complete proteome] [HAMAP] EMBL CAQ79890.1
Taxonomic identifier316275 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length742 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region134 – 1418Substrate binding By similarity PIRSR PIRSR009407-2

Sites

Metal binding3521Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5501Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5541Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1471Substrate By similarity PIRSR PIRSR009407-2
Binding site5491Substrate By similarity PIRSR PIRSR009407-2
Site2571Critical for catalysis By similarity
Site4221Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

Sequence LengthMass (Da)Tools
B6EIM0 [UniParc].

Last modified November 25, 2008. Version 1.
Checksum: 029A917B873688AB

FASTA74280,190
        10         20         30         40         50         60 
MTTQKSKIIY TITDEAPALA THSLLPIIQA FAASSNVDVD TRDISLAGRV IANFSEYLTE 

        70         80         90        100        110        120 
DQRISDALVE LGELAKTPEA NIIKLPNISA SIPQLHAVIK ELQAKGYALP NYPEEAKTDE 

       130        140        150        160        170        180 
EKTVKAVYDK IKGSAVNPVL REGNSDRRAP GAVKQYARNN PHSMGAWAKD SKSHVASMSE 

       190        200        210        220        230        240 
GDFYASEKSV TIDGATNVNI EFVADNGDVT VLKEGLALKD KEIIDGSCLS KKALVEFFEA 

       250        260        270        280        290        300 
EIKKAKEEDV LLSLHMKATM MKVSDPVIFG HAVKVFYKEV FDKYATTFAK LGVDANNGVG 

       310        320        330        340        350        360 
DVYTKIVSLP DAEKAAIEAD LAAVYEYQPE LAMVDSDRGI TNLHVPSDVI IDASMPAALR 

       370        380        390        400        410        420 
TSGRMWGPDG QLKDTKAMIP DRCYAGVYQS VIEFCKVNGA FDPTTMGSVP NVGLMAQKAE 

       430        440        450        460        470        480 
EYGSHDKTFI LPAAGTVRVV DATGTALIEH SVGEGDIWRM CQAKDAPIQD WVKLAVNRAR 

       490        500        510        520        530        540 
ATGTPAIFWL DTNRQHDAEL IKKVNTYLAD HDTSGLDIQI LSPVAATEFT LARIIKGEDT 

       550        560        570        580        590        600 
ISVTGNVLRD YLTDLFPILE LGTSAKMLSI VPLMNGGGLF ETGAGGSAPK HVQQFEKENH 

       610        620        630        640        650        660 
LRWDSLGEFL ALAASFEHLS VTTGNAKAQI LADTLDAATS KFLETNKSPS RRVGELDNRG 

       670        680        690        700        710        720 
SHFYLAMYWA QELAAQTGDA ELQAYFGSLA ETLTSNEAKI VEELNAAQGV VGNVGGYFQP 

       730        740 
IAELAAKEMR PSATLNAALA TL 

« Hide

References

[1]"The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: LFI1238 EMBL CAQ79890.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FM178379 Genomic DNA. Translation: CAQ79890.1.
RefSeqYP_002263571.1. NC_011312.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316275.VSAL_I2205.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ79890; CAQ79890; VSAL_I2205.
GeneID6989112.
KEGGvsa:VSAL_I2205.
PATRIC20854801. VBIAliSal95923_2406.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2838.
HOGENOMHOG000240860.
KOK00031.
OMARPSEVFN.
OrthoDBEOG6DVJPP.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB6EIM0_ALISL
AccessionPrimary (citable) accession number: B6EIM0
Entry history
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: July 9, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)