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B6EHQ6 (B6EHQ6_ALISL) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=4.1.1.- EMBL CAQ79717.1
Gene names
Ordered Locus Names:VSAL_I2032 EMBL CAQ79717.1
OrganismAliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238)) [Complete proteome] [HAMAP] EMBL CAQ79717.1
Taxonomic identifier316275 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length547 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Sequences

Sequence LengthMass (Da)Tools
B6EHQ6 [UniParc].

Last modified November 25, 2008. Version 1.
Checksum: 20C3C30F218E245F

FASTA54761,325
        10         20         30         40         50         60 
MVTDNKTADA NLESMLRIFT VPEAPDSTLG KIEQELSQNL NQFLREHIVA EEKPLTEIEK 

        70         80         90        100        110        120 
DFTDSSMPEY PTYVSEHTEH LLETVVSQSV HTSAPSFIGH MTSALPYFLM PLSKIMIALN 

       130        140        150        160        170        180 
QNLVKIETSK AFTPLERQVL GMLHRLIYGQ ESAFYERWMH SADHSLGAFC SGGTIANITA 

       190        200        210        220        230        240 
LWVARNRLLQ PEGNFKGIAQ EGLFAALTHY KYSGLAIFVS ERGHYSVKKA ADVLGIGQDS 

       250        260        270        280        290        300 
VIPVKTDNNN RICLHDLKLK MAQAKEKNIK PLAIIGVAGT TETGTIDPLR ALAEVAKQVN 

       310        320        330        340        350        360 
CHFHVDAAWG GATLMSNQYR YLLDGIDLAD SVTIDAHKQL YVPMGAGMVI FKDPELMSSI 

       370        380        390        400        410        420 
QHHAEYILRK GSKDLGRHTL EGSRSGMAML LYSCFNVISR PGYELLINQS IEKAKYFAEI 

       430        440        450        460        470        480 
IDQQDDFEVI TQPELCLLTY RYIPKNVTLA LTKANPEQTI EIYDHLDELT KFIQKTQRET 

       490        500        510        520        530        540 
GKSFVSRTRL TPEAYQNMPT IVFRVVLANP LTTKEILHSV LIEQREIAQK SEISLPQLTK 


LADSILK 

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References

[1]"The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: LFI1238 EMBL CAQ79717.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FM178379 Genomic DNA. Translation: CAQ79717.1.
RefSeqYP_002263411.1. NC_011312.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316275.VSAL_I2032.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ79717; CAQ79717; VSAL_I2032.
GeneID6988652.
KEGGvsa:VSAL_I2032.
PATRIC20854424. VBIAliSal95923_2222.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000282553.
KOK01580.
OMAALGAFCS.
OrthoDBEOG6MSRZP.
ProtClustDBCLSK874231.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB6EHQ6_ALISL
AccessionPrimary (citable) accession number: B6EHQ6
Entry history
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: November 13, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)