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B6EGT4 (B6EGT4_ALISL) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length554 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL CAQ80650.1
   Molecular functionGlycosidase EMBL CAQ80650.1
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionalpha-amylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential EMBL CAQ80650.1
Chain26 – 554529 Potential EMBL CAQ80650.1
PRO_5000405685

Sequences

Sequence LengthMass (Da)Tools
B6EGT4 [UniParc].

Last modified November 25, 2008. Version 1.
Checksum: 09FE362C3109264D

FASTA55461,960
        10         20         30         40         50         60 
MKLSVCATFI SLSLLVGCQS TSLTSTDSSD SISTADSSNQ IESTTSSNNN TAICPVLGIQ 

        70         80         90        100        110        120 
PVTVSVSDLW ANGDVITDAY TGNIAQVVNG EITLTPSRHS GGVLLLESEE EKARFSWDGA 

       130        140        150        160        170        180 
TFYHIATDRF FNGNSWNDHS YGRQSTKEGF QGGDIVGLTK KLDYLAELGV DVVWISTPLE 

       190        200        210        220        230        240 
QVHGWLPNKS GNSPEYPYAG GATLDWTQLD TNMGSEQEMR TFVDLAHQLG MRVMWSVDTA 

       250        260        270        280        290        300 
PPTPTLSDLQ QFSIQPNNPD ALPSYWSEWQ PQEGQNLTHY LDAFKNKNGE IPDWWSEAWM 

       310        320        330        340        350        360 
EENNENAITL PAFFANKPST KVKSSEKTKN EYLAGWMSAW VSEFGIDGFV VSNSTPELTQ 

       370        380        390        400        410        420 
KIEQEGKDAF TLWNKDNAYK ALENASFRVI DLQQQNYFSD QMLSLKSNDE PHCLTKLNAE 

       430        440        450        460        470        480 
YVTQSQAEKP SMTRLTWFDG KSLSDSSVGS VNADNYADYR DAATALLLSP NAVSIWYGDE 

       490        500        510        520        530        540 
TAKMGGIYSK MNWNEIKDQR WSLQSHWKKL IEFRNNHSSI ANGEHQVIKR EPYYAFIRKN 

       550 
ESDSVMVVYT GEKK 

« Hide

References

[1]"The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: LFI1238 EMBL CAQ80650.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FM178379 Genomic DNA. Translation: CAQ80650.1.
RefSeqYP_002264291.1. NC_011312.1.

3D structure databases

ProteinModelPortalB6EGT4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316275.VSAL_I2966.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ80650; CAQ80650; VSAL_I2966.
GeneID6988611.
KEGGvsa:VSAL_I2966.
PATRIC20856480. VBIAliSal95923_3211.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000073462.
KOK01176.
OMAGQNWHSF.
OrthoDBEOG65QWH3.

Family and domain databases

Gene3D3.20.20.80. 2 hits.
InterProIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
ProtoNetSearch...

Entry information

Entry nameB6EGT4_ALISL
AccessionPrimary (citable) accession number: B6EGT4
Entry history
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)