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B6EGT4

- B6EGT4_ALISL

UniProt

B6EGT4 - B6EGT4_ALISL

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Protein
Submitted name:

Alpha-amylase

Gene

malS

Organism
Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported (EC:3.2.1.1Imported)
Gene namesi
Name:malSImported
Ordered Locus Names:VSAL_I2966Imported
OrganismiAliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))Imported
Taxonomic identifieri316275 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001730: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525 PotentialImportedAdd
BLAST
Chaini26 – 554529 PotentialImportedPRO_5000405685Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi316275.VSAL_I2966.

Structurei

3D structure databases

ProteinModelPortaliB6EGT4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000073462.
KOiK01176.
OMAiGQNWHSF.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

B6EGT4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKLSVCATFI SLSLLVGCQS TSLTSTDSSD SISTADSSNQ IESTTSSNNN
60 70 80 90 100
TAICPVLGIQ PVTVSVSDLW ANGDVITDAY TGNIAQVVNG EITLTPSRHS
110 120 130 140 150
GGVLLLESEE EKARFSWDGA TFYHIATDRF FNGNSWNDHS YGRQSTKEGF
160 170 180 190 200
QGGDIVGLTK KLDYLAELGV DVVWISTPLE QVHGWLPNKS GNSPEYPYAG
210 220 230 240 250
GATLDWTQLD TNMGSEQEMR TFVDLAHQLG MRVMWSVDTA PPTPTLSDLQ
260 270 280 290 300
QFSIQPNNPD ALPSYWSEWQ PQEGQNLTHY LDAFKNKNGE IPDWWSEAWM
310 320 330 340 350
EENNENAITL PAFFANKPST KVKSSEKTKN EYLAGWMSAW VSEFGIDGFV
360 370 380 390 400
VSNSTPELTQ KIEQEGKDAF TLWNKDNAYK ALENASFRVI DLQQQNYFSD
410 420 430 440 450
QMLSLKSNDE PHCLTKLNAE YVTQSQAEKP SMTRLTWFDG KSLSDSSVGS
460 470 480 490 500
VNADNYADYR DAATALLLSP NAVSIWYGDE TAKMGGIYSK MNWNEIKDQR
510 520 530 540 550
WSLQSHWKKL IEFRNNHSSI ANGEHQVIKR EPYYAFIRKN ESDSVMVVYT

GEKK
Length:554
Mass (Da):61,960
Last modified:November 25, 2008 - v1
Checksum:i09FE362C3109264D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM178379 Genomic DNA. Translation: CAQ80650.1.
RefSeqiYP_002264291.1. NC_011312.1.

Genome annotation databases

EnsemblBacteriaiCAQ80650; CAQ80650; VSAL_I2966.
GeneIDi6988611.
KEGGivsa:VSAL_I2966.
PATRICi20856480. VBIAliSal95923_3211.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM178379 Genomic DNA. Translation: CAQ80650.1 .
RefSeqi YP_002264291.1. NC_011312.1.

3D structure databases

ProteinModelPortali B6EGT4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316275.VSAL_I2966.

Protein family/group databases

CAZyi GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAQ80650 ; CAQ80650 ; VSAL_I2966 .
GeneIDi 6988611.
KEGGi vsa:VSAL_I2966.
PATRICi 20856480. VBIAliSal95923_3211.

Phylogenomic databases

eggNOGi COG0366.
HOGENOMi HOG000073462.
KOi K01176.
OMAi GQNWHSF.
OrthoDBi EOG65QWH3.

Family and domain databases

Gene3Di 3.20.20.80. 2 hits.
InterProi IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 2 hits.
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
    Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
    BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LFI1238Imported.

Entry informationi

Entry nameiB6EGT4_ALISL
AccessioniPrimary (citable) accession number: B6EGT4
Entry historyi
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: October 29, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3