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B6EGT4

- B6EGT4_ALISL

UniProt

B6EGT4 - B6EGT4_ALISL

Protein
Submitted name:

Alpha-amylase

Gene

malS

Organism
Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (25 Nov 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. cation binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Keywords - Molecular functioni

    GlycosidaseImported, Hydrolase

    Protein family/group databases

    CAZyiGH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha-amylaseImported (EC:3.2.1.1Imported)
    Gene namesi
    Name:malSImported
    Ordered Locus Names:VSAL_I2966Imported
    OrganismiAliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))Imported
    Taxonomic identifieri316275 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
    ProteomesiUP000001730: Chromosome 1

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2525 PotentialImportedAdd
    BLAST
    Chaini26 – 554529 PotentialImportedPRO_5000405685Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi316275.VSAL_I2966.

    Structurei

    3D structure databases

    ProteinModelPortaliB6EGT4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    eggNOGiCOG0366.
    HOGENOMiHOG000073462.
    KOiK01176.
    OMAiGQNWHSF.
    OrthoDBiEOG65QWH3.

    Family and domain databases

    Gene3Di3.20.20.80. 2 hits.
    InterProiIPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 2 hits.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    B6EGT4-1 [UniParc]FASTAAdd to Basket

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    MKLSVCATFI SLSLLVGCQS TSLTSTDSSD SISTADSSNQ IESTTSSNNN    50
    TAICPVLGIQ PVTVSVSDLW ANGDVITDAY TGNIAQVVNG EITLTPSRHS 100
    GGVLLLESEE EKARFSWDGA TFYHIATDRF FNGNSWNDHS YGRQSTKEGF 150
    QGGDIVGLTK KLDYLAELGV DVVWISTPLE QVHGWLPNKS GNSPEYPYAG 200
    GATLDWTQLD TNMGSEQEMR TFVDLAHQLG MRVMWSVDTA PPTPTLSDLQ 250
    QFSIQPNNPD ALPSYWSEWQ PQEGQNLTHY LDAFKNKNGE IPDWWSEAWM 300
    EENNENAITL PAFFANKPST KVKSSEKTKN EYLAGWMSAW VSEFGIDGFV 350
    VSNSTPELTQ KIEQEGKDAF TLWNKDNAYK ALENASFRVI DLQQQNYFSD 400
    QMLSLKSNDE PHCLTKLNAE YVTQSQAEKP SMTRLTWFDG KSLSDSSVGS 450
    VNADNYADYR DAATALLLSP NAVSIWYGDE TAKMGGIYSK MNWNEIKDQR 500
    WSLQSHWKKL IEFRNNHSSI ANGEHQVIKR EPYYAFIRKN ESDSVMVVYT 550
    GEKK 554
    Length:554
    Mass (Da):61,960
    Last modified:November 25, 2008 - v1
    Checksum:i09FE362C3109264D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FM178379 Genomic DNA. Translation: CAQ80650.1.
    RefSeqiYP_002264291.1. NC_011312.1.

    Genome annotation databases

    EnsemblBacteriaiCAQ80650; CAQ80650; VSAL_I2966.
    GeneIDi6988611.
    KEGGivsa:VSAL_I2966.
    PATRICi20856480. VBIAliSal95923_3211.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FM178379 Genomic DNA. Translation: CAQ80650.1 .
    RefSeqi YP_002264291.1. NC_011312.1.

    3D structure databases

    ProteinModelPortali B6EGT4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 316275.VSAL_I2966.

    Protein family/group databases

    CAZyi GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAQ80650 ; CAQ80650 ; VSAL_I2966 .
    GeneIDi 6988611.
    KEGGi vsa:VSAL_I2966.
    PATRICi 20856480. VBIAliSal95923_3211.

    Phylogenomic databases

    eggNOGi COG0366.
    HOGENOMi HOG000073462.
    KOi K01176.
    OMAi GQNWHSF.
    OrthoDBi EOG65QWH3.

    Family and domain databases

    Gene3Di 3.20.20.80. 2 hits.
    InterProi IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 2 hits.
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay."
      Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., Thurston S., Parkhill J., Willassen N.P., Thomson N.R.
      BMC Genomics 9:616-616(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: LFI1238Imported.

    Entry informationi

    Entry nameiB6EGT4_ALISL
    AccessioniPrimary (citable) accession number: B6EGT4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 25, 2008
    Last sequence update: November 25, 2008
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3