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B6A3C2

- B6A3C2_RHILW

UniProt

B6A3C2 - B6A3C2_RHILW

Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Rleg2_5730

Organism
Rhizobium leguminosarum bv. trifolii (strain WSM2304)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 34 (01 Oct 2014)
      Sequence version 1 (25 Nov 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRLEG395492:GJB3-5797-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, ligase domain proteinImported
    Gene namesi
    Ordered Locus Names:Rleg2_5730Imported
    Encoded oniPlasmid pRLG202Imported
    OrganismiRhizobium leguminosarum bv. trifolii (strain WSM2304)Imported
    Taxonomic identifieri395492 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
    ProteomesiUP000008330: Plasmid pRLG202

    Interactioni

    Protein-protein interaction databases

    STRINGi395492.Rleg2_5730.

    Structurei

    3D structure databases

    ProteinModelPortaliB6A3C2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiLEHACHH.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B6A3C2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTRSRRPSLP FLNESNATLQ SRPIRKRDPD QPSLPFDPMP ARVEPCLALL    50
    KPKVPIGPDW LYEAKWDGYR LAIHIEPKGV RVITRGGHDW THRFPTIAAA 100
    AKELGVTTGI LDGEAVVLDD HGRSDFGALQ RSLGGRGGKR ASSESILYAF 150
    DLLYLDGHDL TGTELAVRRH LLKDLIPEDN RTIRFSEEID LPAEDLLEHA 200
    CHHHMEGIIA KHRDRPYSSG RTGDWLKIKC VESESFMIVG YEQSAAARGG 250
    IGSLLLAGKR GFDWISVGSV GTGFSASDAA QLKKTLDRLK TNRPVVPLKG 300
    KRYVFVQPTL IAEIEFRGWT DDGSLRHASY KGLREVQDNA AVFDMTGFDR 350
    Length:350
    Mass (Da):38,929
    Last modified:November 25, 2008 - v1
    Checksum:iB0DD8B99374F8211
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001193 Genomic DNA. Translation: ACI58905.1.
    RefSeqiYP_002278005.1. NC_011366.1.

    Genome annotation databases

    EnsemblBacteriaiACI58905; ACI58905; Rleg2_5730.
    GeneIDi6977121.
    KEGGirlt:Rleg2_5730.
    PATRICi23120538. VBIRhiLeg95088_0121.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001193 Genomic DNA. Translation: ACI58905.1 .
    RefSeqi YP_002278005.1. NC_011366.1.

    3D structure databases

    ProteinModelPortali B6A3C2.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 395492.Rleg2_5730.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACI58905 ; ACI58905 ; Rleg2_5730 .
    GeneIDi 6977121.
    KEGGi rlt:Rleg2_5730.
    PATRICi 23120538. VBIRhiLeg95088_0121.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi LEHACHH.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci RLEG395492:GJB3-5797-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of plasmid 2 of Rhizobium leguminosarum bv. trifolii WSM2304."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R.
      , Ardley J., Tiwari R.P., O'Hara G., Howieson J., Brau L., Reeve W.
      Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: WSM2304Imported.

    Entry informationi

    Entry nameiB6A3C2_RHILW
    AccessioniPrimary (citable) accession number: B6A3C2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 25, 2008
    Last sequence update: November 25, 2008
    Last modified: October 1, 2014
    This is version 34 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported, PlasmidImported

    External Data

    Dasty 3