B6A3C2 (B6A3C2_RHILW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase LigD, ligase domain protein EMBL ACI58905.1

Gene names

Ordered Locus Names:

Rleg2_5730 EMBL ACI58905.1

Encoded on

Plasmid pRLG202 EMBL ACI58905.1

Organism

Rhizobium leguminosarum bv. trifolii (strain WSM2304) [Complete proteome] [HAMAP] EMBL ACI58905.1

Taxonomic identifier

395492 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium › Rhizobium leguminosarum › Rhizobium leguminosarum bv. trifolii

Protein attributes

Sequence length	350 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACI58905.1
Technical term	Complete proteome Plasmid EMBL ACI58905.1
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B6A3C2 [UniParc]. Last modified November 25, 2008. Version 1. Checksum: B0DD8B99374F8211	FASTA	350	38,929
	10 20 30 40 50 60 MTRSRRPSLP FLNESNATLQ SRPIRKRDPD QPSLPFDPMP ARVEPCLALL KPKVPIGPDW 70 80 90 100 110 120 LYEAKWDGYR LAIHIEPKGV RVITRGGHDW THRFPTIAAA AKELGVTTGI LDGEAVVLDD 130 140 150 160 170 180 HGRSDFGALQ RSLGGRGGKR ASSESILYAF DLLYLDGHDL TGTELAVRRH LLKDLIPEDN 190 200 210 220 230 240 RTIRFSEEID LPAEDLLEHA CHHHMEGIIA KHRDRPYSSG RTGDWLKIKC VESESFMIVG 250 260 270 280 290 300 YEQSAAARGG IGSLLLAGKR GFDWISVGSV GTGFSASDAA QLKKTLDRLK TNRPVVPLKG 310 320 330 340 350 KRYVFVQPTL IAEIEFRGWT DDGSLRHASY KGLREVQDNA AVFDMTGFDR

References

[1]

"Complete sequence of plasmid 2 of Rhizobium leguminosarum bv. trifolii WSM2304." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R. , Ardley J., Tiwari R.P., O'Hara G., Howieson J., Brau L., Reeve W. Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: WSM2304.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001193 Genomic DNA. Translation: ACI58905.1.
RefSeq	YP_002278005.1. NC_011366.1.
3D structure databases
ProteinModelPortal	B6A3C2.
ModBase	Search...
Protein-protein interaction databases
STRING	395492.Rleg2_5730.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACI58905; ACI58905; Rleg2_5730.
GeneID	6977121.
KEGG	rlt:Rleg2_5730.
PATRIC	23120538. VBIRhiLeg95088_0121.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000222509.
KO	K01971.
OMA	QDNAAVF.
ProtClustDB	CLSK806855.
Enzyme and pathway databases
BioCyc	RLEG395492:GJB3-5797-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B6A3C2_RHILW

Accession

Primary (citable) accession number: B6A3C2

Entry history

Integrated into UniProtKB/TrEMBL:	November 25, 2008
Last sequence update:	November 25, 2008
Last modified:	May 1, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)