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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Rleg2_5730

Organism
Rhizobium leguminosarum bv. trifolii (strain WSM2304)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRLEG395492:GJB3-5797-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:Rleg2_5730Imported
Encoded oniPlasmid pRLG202Imported
OrganismiRhizobium leguminosarum bv. trifolii (strain WSM2304)Imported
Taxonomic identifieri395492 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000008330 Componenti: Plasmid pRLG202

Interactioni

Protein-protein interaction databases

STRINGi395492.Rleg2_5730.

Structurei

3D structure databases

ProteinModelPortaliB6A3C2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiQDNAAVF.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B6A3C2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTRSRRPSLP FLNESNATLQ SRPIRKRDPD QPSLPFDPMP ARVEPCLALL
60 70 80 90 100
KPKVPIGPDW LYEAKWDGYR LAIHIEPKGV RVITRGGHDW THRFPTIAAA
110 120 130 140 150
AKELGVTTGI LDGEAVVLDD HGRSDFGALQ RSLGGRGGKR ASSESILYAF
160 170 180 190 200
DLLYLDGHDL TGTELAVRRH LLKDLIPEDN RTIRFSEEID LPAEDLLEHA
210 220 230 240 250
CHHHMEGIIA KHRDRPYSSG RTGDWLKIKC VESESFMIVG YEQSAAARGG
260 270 280 290 300
IGSLLLAGKR GFDWISVGSV GTGFSASDAA QLKKTLDRLK TNRPVVPLKG
310 320 330 340 350
KRYVFVQPTL IAEIEFRGWT DDGSLRHASY KGLREVQDNA AVFDMTGFDR
Length:350
Mass (Da):38,929
Last modified:November 24, 2008 - v1
Checksum:iB0DD8B99374F8211
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001193 Genomic DNA. Translation: ACI58905.1.
RefSeqiWP_012555106.1. NC_011366.1.
YP_002278005.1. NC_011366.1.

Genome annotation databases

EnsemblBacteriaiACI58905; ACI58905; Rleg2_5730.
KEGGirlt:Rleg2_5730.
PATRICi23120538. VBIRhiLeg95088_0121.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001193 Genomic DNA. Translation: ACI58905.1.
RefSeqiWP_012555106.1. NC_011366.1.
YP_002278005.1. NC_011366.1.

3D structure databases

ProteinModelPortaliB6A3C2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi395492.Rleg2_5730.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACI58905; ACI58905; Rleg2_5730.
KEGGirlt:Rleg2_5730.
PATRICi23120538. VBIRhiLeg95088_0121.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiQDNAAVF.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciRLEG395492:GJB3-5797-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of plasmid 2 of Rhizobium leguminosarum bv. trifolii WSM2304."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R.
    , Ardley J., Tiwari R.P., O'Hara G., Howieson J., Brau L., Reeve W.
    Submitted (SEP-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM2304Imported.

Entry informationi

Entry nameiB6A3C2_RHILW
AccessioniPrimary (citable) accession number: B6A3C2
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2008
Last sequence update: November 24, 2008
Last modified: March 31, 2015
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.