Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

B6A3C2

- B6A3C2_RHILW

UniProt

B6A3C2 - B6A3C2_RHILW

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Rleg2_5730

Organism
Rhizobium leguminosarum bv. trifolii (strain WSM2304)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRLEG395492:GJB3-5797-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:Rleg2_5730Imported
Encoded oniPlasmid pRLG202Imported
OrganismiRhizobium leguminosarum bv. trifolii (strain WSM2304)Imported
Taxonomic identifieri395492 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000008330: Plasmid pRLG202

Interactioni

Protein-protein interaction databases

STRINGi395492.Rleg2_5730.

Structurei

3D structure databases

ProteinModelPortaliB6A3C2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLEHACHH.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B6A3C2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTRSRRPSLP FLNESNATLQ SRPIRKRDPD QPSLPFDPMP ARVEPCLALL
60 70 80 90 100
KPKVPIGPDW LYEAKWDGYR LAIHIEPKGV RVITRGGHDW THRFPTIAAA
110 120 130 140 150
AKELGVTTGI LDGEAVVLDD HGRSDFGALQ RSLGGRGGKR ASSESILYAF
160 170 180 190 200
DLLYLDGHDL TGTELAVRRH LLKDLIPEDN RTIRFSEEID LPAEDLLEHA
210 220 230 240 250
CHHHMEGIIA KHRDRPYSSG RTGDWLKIKC VESESFMIVG YEQSAAARGG
260 270 280 290 300
IGSLLLAGKR GFDWISVGSV GTGFSASDAA QLKKTLDRLK TNRPVVPLKG
310 320 330 340 350
KRYVFVQPTL IAEIEFRGWT DDGSLRHASY KGLREVQDNA AVFDMTGFDR
Length:350
Mass (Da):38,929
Last modified:November 25, 2008 - v1
Checksum:iB0DD8B99374F8211
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001193 Genomic DNA. Translation: ACI58905.1.
RefSeqiWP_012555106.1. NC_011366.1.
YP_002278005.1. NC_011366.1.

Genome annotation databases

EnsemblBacteriaiACI58905; ACI58905; Rleg2_5730.
GeneIDi6977121.
KEGGirlt:Rleg2_5730.
PATRICi23120538. VBIRhiLeg95088_0121.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001193 Genomic DNA. Translation: ACI58905.1 .
RefSeqi WP_012555106.1. NC_011366.1.
YP_002278005.1. NC_011366.1.

3D structure databases

ProteinModelPortali B6A3C2.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 395492.Rleg2_5730.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACI58905 ; ACI58905 ; Rleg2_5730 .
GeneIDi 6977121.
KEGGi rlt:Rleg2_5730.
PATRICi 23120538. VBIRhiLeg95088_0121.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000222509.
KOi K01971.
OMAi LEHACHH.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RLEG395492:GJB3-5797-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of plasmid 2 of Rhizobium leguminosarum bv. trifolii WSM2304."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R.
    , Ardley J., Tiwari R.P., O'Hara G., Howieson J., Brau L., Reeve W.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM2304Imported.

Entry informationi

Entry nameiB6A3C2_RHILW
AccessioniPrimary (citable) accession number: B6A3C2
Entry historyi
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: October 29, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3