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B6A397

- B6A397_RHILW

UniProt

B6A397 - B6A397_RHILW

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Protein
Submitted name: DNA ligase D
Gene
Rleg2_5705
Organism
Rhizobium leguminosarum bv. trifolii (strain WSM2304)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRLEG395492:GJB3-5772-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Rleg2_5705Imported
Encoded oniPlasmid pRLG202Imported
OrganismiRhizobium leguminosarum bv. trifolii (strain WSM2304)Imported
Taxonomic identifieri395492 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000008330: Plasmid pRLG202

Interactioni

Protein-protein interaction databases

STRINGi395492.Rleg2_5705.

Structurei

3D structure databases

ProteinModelPortaliB6A397.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B6A397-1 [UniParc]FASTAAdd to Basket

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MASDNLSTYR SKRDFKKTAE PSGEKQIARS NRRRFIIQKH DATRLHYDLR    50
LELDGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG 100
GTVMLWDRGY WEPEGKKSPE QALAKGDFKF TLEGERLHGS FVLVRMRNDR 150
DGGKRTNWLL IKHHDAFSVE ENGAAVLEEN DTSVASGRTM DAIATGKGRK 200
PKPFMIKGGD IKADAVWDSN QGLAAEERKE EGRAGRTPKT AAKVDLPDFI 250
APQLCQTLER PPAGEGWIHE IKFDGYRIQM RILDGEVTLK TRKGLDWTGK 300
YPEVAEAASA LPDAIIDGEI CALDDHGVPD FAALQAALSE GRTGDLVYFA 350
FDLLYEGGED LRSLPVIERK ARLQSLLADA GDDPRLRFVE HFETGGDAVL 400
RSACKLSLEG IVSKQSDAPY QSGRTDSWAK SKCRAGHEVV IGAYAKTNGK 450
FRSLLVGVYR GDHFVYVGRV GTGYGAKKVE TLLPKLQALE TAKSPFTGIG 500
APKKEAEVTW VKPKLVAEIE FAGWTADGIV RQAAFKGLRE DKPAREVKAE 550
RPAKPAETDV PEPEPAAEVK ARPARRKGAK AEVMGVMISN PDKPLWPDAN 600
DRKPVTKEEL ARYYEAVGGW MIAHIEGRPC SIIRAPDGLG GEQFFQRHAM 650
PGTSNLLELV KVFGDKKPYL QIDRVEGLAA VAQIGAVELH PWNCQPHKPE 700
VPGRLVFDLD PGPDVPFSTV VSAAREMHDR LDALGLVSFC KTTGGKGLHV 750
VTPLAINKRK PLSWAEAKSF AHDVCQQMAR DNPDLYLIKM TKSLRNGRIF 800
LDYLRNDRMA TAVAPLSPRA RPGATVSMPL TWTQVKSDLD PKRFTIRTVP 850
ALLSKSSAWE DYSDGQRPLE QAIKRLSKVS NAA 883
Length:883
Mass (Da):97,473
Last modified:November 25, 2008 - v1
Checksum:i72212D3782726957
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001193 Genomic DNA. Translation: ACI58880.1.
RefSeqiYP_002277980.1. NC_011366.1.

Genome annotation databases

EnsemblBacteriaiACI58880; ACI58880; Rleg2_5705.
GeneIDi6977096.
KEGGirlt:Rleg2_5705.
PATRICi23120480. VBIRhiLeg95088_0092.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001193 Genomic DNA. Translation: ACI58880.1 .
RefSeqi YP_002277980.1. NC_011366.1.

3D structure databases

ProteinModelPortali B6A397.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 395492.Rleg2_5705.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACI58880 ; ACI58880 ; Rleg2_5705 .
GeneIDi 6977096.
KEGGi rlt:Rleg2_5705.
PATRICi 23120480. VBIRhiLeg95088_0092.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RLEG395492:GJB3-5772-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of plasmid 2 of Rhizobium leguminosarum bv. trifolii WSM2304."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R.
    , Ardley J., Tiwari R.P., O'Hara G., Howieson J., Brau L., Reeve W.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM2304.

Entry informationi

Entry nameiB6A397_RHILW
AccessioniPrimary (citable) accession number: B6A397
Entry historyi
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported

External Data

Dasty 3

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