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B6A397 (B6A397_RHILW) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase D EMBL ACI58880.1
Gene names
Ordered Locus Names:Rleg2_5705 EMBL ACI58880.1
Encoded onPlasmid pRLG202 EMBL ACI58880.1
OrganismRhizobium leguminosarum bv. trifolii (strain WSM2304) [Complete proteome] [HAMAP] EMBL ACI58880.1
Taxonomic identifier395492 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium ›

Protein attributes

Sequence length883 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACI58880.1
   Technical termComplete proteome
Plasmid EMBL ACI58880.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B6A397 [UniParc].

Last modified November 25, 2008. Version 1.
Checksum: 72212D3782726957

FASTA88397,473
        10         20         30         40         50         60 
MASDNLSTYR SKRDFKKTAE PSGEKQIARS NRRRFIIQKH DATRLHYDLR LELDGVFKSW 

        70         80         90        100        110        120 
AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVMLWDRGY WEPEGKKSPE 

       130        140        150        160        170        180 
QALAKGDFKF TLEGERLHGS FVLVRMRNDR DGGKRTNWLL IKHHDAFSVE ENGAAVLEEN 

       190        200        210        220        230        240 
DTSVASGRTM DAIATGKGRK PKPFMIKGGD IKADAVWDSN QGLAAEERKE EGRAGRTPKT 

       250        260        270        280        290        300 
AAKVDLPDFI APQLCQTLER PPAGEGWIHE IKFDGYRIQM RILDGEVTLK TRKGLDWTGK 

       310        320        330        340        350        360 
YPEVAEAASA LPDAIIDGEI CALDDHGVPD FAALQAALSE GRTGDLVYFA FDLLYEGGED 

       370        380        390        400        410        420 
LRSLPVIERK ARLQSLLADA GDDPRLRFVE HFETGGDAVL RSACKLSLEG IVSKQSDAPY 

       430        440        450        460        470        480 
QSGRTDSWAK SKCRAGHEVV IGAYAKTNGK FRSLLVGVYR GDHFVYVGRV GTGYGAKKVE 

       490        500        510        520        530        540 
TLLPKLQALE TAKSPFTGIG APKKEAEVTW VKPKLVAEIE FAGWTADGIV RQAAFKGLRE 

       550        560        570        580        590        600 
DKPAREVKAE RPAKPAETDV PEPEPAAEVK ARPARRKGAK AEVMGVMISN PDKPLWPDAN 

       610        620        630        640        650        660 
DRKPVTKEEL ARYYEAVGGW MIAHIEGRPC SIIRAPDGLG GEQFFQRHAM PGTSNLLELV 

       670        680        690        700        710        720 
KVFGDKKPYL QIDRVEGLAA VAQIGAVELH PWNCQPHKPE VPGRLVFDLD PGPDVPFSTV 

       730        740        750        760        770        780 
VSAAREMHDR LDALGLVSFC KTTGGKGLHV VTPLAINKRK PLSWAEAKSF AHDVCQQMAR 

       790        800        810        820        830        840 
DNPDLYLIKM TKSLRNGRIF LDYLRNDRMA TAVAPLSPRA RPGATVSMPL TWTQVKSDLD 

       850        860        870        880 
PKRFTIRTVP ALLSKSSAWE DYSDGQRPLE QAIKRLSKVS NAA

« Hide

References

[1]"Complete sequence of plasmid 2 of Rhizobium leguminosarum bv. trifolii WSM2304."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R. expand/collapse author list , Ardley J., Tiwari R.P., O'Hara G., Howieson J., Brau L., Reeve W.
Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: WSM2304.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001193 Genomic DNA. Translation: ACI58880.1.
RefSeqYP_002277980.1. NC_011366.1.

3D structure databases

ProteinModelPortalB6A397.
ModBaseSearch...

Protein-protein interaction databases

STRING395492.Rleg2_5705.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACI58880; ACI58880; Rleg2_5705.
GeneID6977096.
KEGGrlt:Rleg2_5705.
PATRIC23120480. VBIRhiLeg95088_0092.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALVAECEF.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycRLEG395492:GJB3-5772-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB6A397_RHILW
AccessionPrimary (citable) accession number: B6A397
Entry history
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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