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B6A397

- B6A397_RHILW

UniProt

B6A397 - B6A397_RHILW

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Protein
Submitted name:

DNA ligase D

Gene

Rleg2_5705

Organism
Rhizobium leguminosarum bv. trifolii (strain WSM2304)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRLEG395492:GJB3-5772-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Rleg2_5705Imported
Encoded oniPlasmid pRLG202Imported
OrganismiRhizobium leguminosarum bv. trifolii (strain WSM2304)Imported
Taxonomic identifieri395492 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000008330: Plasmid pRLG202

Interactioni

Protein-protein interaction databases

STRINGi395492.Rleg2_5705.

Structurei

3D structure databases

ProteinModelPortaliB6A397.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B6A397-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASDNLSTYR SKRDFKKTAE PSGEKQIARS NRRRFIIQKH DATRLHYDLR
60 70 80 90 100
LELDGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG
110 120 130 140 150
GTVMLWDRGY WEPEGKKSPE QALAKGDFKF TLEGERLHGS FVLVRMRNDR
160 170 180 190 200
DGGKRTNWLL IKHHDAFSVE ENGAAVLEEN DTSVASGRTM DAIATGKGRK
210 220 230 240 250
PKPFMIKGGD IKADAVWDSN QGLAAEERKE EGRAGRTPKT AAKVDLPDFI
260 270 280 290 300
APQLCQTLER PPAGEGWIHE IKFDGYRIQM RILDGEVTLK TRKGLDWTGK
310 320 330 340 350
YPEVAEAASA LPDAIIDGEI CALDDHGVPD FAALQAALSE GRTGDLVYFA
360 370 380 390 400
FDLLYEGGED LRSLPVIERK ARLQSLLADA GDDPRLRFVE HFETGGDAVL
410 420 430 440 450
RSACKLSLEG IVSKQSDAPY QSGRTDSWAK SKCRAGHEVV IGAYAKTNGK
460 470 480 490 500
FRSLLVGVYR GDHFVYVGRV GTGYGAKKVE TLLPKLQALE TAKSPFTGIG
510 520 530 540 550
APKKEAEVTW VKPKLVAEIE FAGWTADGIV RQAAFKGLRE DKPAREVKAE
560 570 580 590 600
RPAKPAETDV PEPEPAAEVK ARPARRKGAK AEVMGVMISN PDKPLWPDAN
610 620 630 640 650
DRKPVTKEEL ARYYEAVGGW MIAHIEGRPC SIIRAPDGLG GEQFFQRHAM
660 670 680 690 700
PGTSNLLELV KVFGDKKPYL QIDRVEGLAA VAQIGAVELH PWNCQPHKPE
710 720 730 740 750
VPGRLVFDLD PGPDVPFSTV VSAAREMHDR LDALGLVSFC KTTGGKGLHV
760 770 780 790 800
VTPLAINKRK PLSWAEAKSF AHDVCQQMAR DNPDLYLIKM TKSLRNGRIF
810 820 830 840 850
LDYLRNDRMA TAVAPLSPRA RPGATVSMPL TWTQVKSDLD PKRFTIRTVP
860 870 880
ALLSKSSAWE DYSDGQRPLE QAIKRLSKVS NAA
Length:883
Mass (Da):97,473
Last modified:November 25, 2008 - v1
Checksum:i72212D3782726957
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001193 Genomic DNA. Translation: ACI58880.1.
RefSeqiWP_012555087.1. NC_011366.1.
YP_002277980.1. NC_011366.1.

Genome annotation databases

EnsemblBacteriaiACI58880; ACI58880; Rleg2_5705.
GeneIDi6977096.
KEGGirlt:Rleg2_5705.
PATRICi23120480. VBIRhiLeg95088_0092.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001193 Genomic DNA. Translation: ACI58880.1 .
RefSeqi WP_012555087.1. NC_011366.1.
YP_002277980.1. NC_011366.1.

3D structure databases

ProteinModelPortali B6A397.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 395492.Rleg2_5705.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACI58880 ; ACI58880 ; Rleg2_5705 .
GeneIDi 6977096.
KEGGi rlt:Rleg2_5705.
PATRICi 23120480. VBIRhiLeg95088_0092.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RLEG395492:GJB3-5772-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of plasmid 2 of Rhizobium leguminosarum bv. trifolii WSM2304."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R.
    , Ardley J., Tiwari R.P., O'Hara G., Howieson J., Brau L., Reeve W.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM2304Imported.

Entry informationi

Entry nameiB6A397_RHILW
AccessioniPrimary (citable) accession number: B6A397
Entry historyi
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: October 29, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3