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B6A397

- B6A397_RHILW

UniProt

B6A397 - B6A397_RHILW

Protein
Submitted name:

DNA ligase D

Gene

Rleg2_5705

Organism
Rhizobium leguminosarum bv. trifolii (strain WSM2304)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (25 Nov 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRLEG395492:GJB3-5772-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Rleg2_5705Imported
    Encoded oniPlasmid pRLG202Imported
    OrganismiRhizobium leguminosarum bv. trifolii (strain WSM2304)Imported
    Taxonomic identifieri395492 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
    ProteomesiUP000008330: Plasmid pRLG202

    Interactioni

    Protein-protein interaction databases

    STRINGi395492.Rleg2_5705.

    Structurei

    3D structure databases

    ProteinModelPortaliB6A397.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B6A397-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASDNLSTYR SKRDFKKTAE PSGEKQIARS NRRRFIIQKH DATRLHYDLR    50
    LELDGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG 100
    GTVMLWDRGY WEPEGKKSPE QALAKGDFKF TLEGERLHGS FVLVRMRNDR 150
    DGGKRTNWLL IKHHDAFSVE ENGAAVLEEN DTSVASGRTM DAIATGKGRK 200
    PKPFMIKGGD IKADAVWDSN QGLAAEERKE EGRAGRTPKT AAKVDLPDFI 250
    APQLCQTLER PPAGEGWIHE IKFDGYRIQM RILDGEVTLK TRKGLDWTGK 300
    YPEVAEAASA LPDAIIDGEI CALDDHGVPD FAALQAALSE GRTGDLVYFA 350
    FDLLYEGGED LRSLPVIERK ARLQSLLADA GDDPRLRFVE HFETGGDAVL 400
    RSACKLSLEG IVSKQSDAPY QSGRTDSWAK SKCRAGHEVV IGAYAKTNGK 450
    FRSLLVGVYR GDHFVYVGRV GTGYGAKKVE TLLPKLQALE TAKSPFTGIG 500
    APKKEAEVTW VKPKLVAEIE FAGWTADGIV RQAAFKGLRE DKPAREVKAE 550
    RPAKPAETDV PEPEPAAEVK ARPARRKGAK AEVMGVMISN PDKPLWPDAN 600
    DRKPVTKEEL ARYYEAVGGW MIAHIEGRPC SIIRAPDGLG GEQFFQRHAM 650
    PGTSNLLELV KVFGDKKPYL QIDRVEGLAA VAQIGAVELH PWNCQPHKPE 700
    VPGRLVFDLD PGPDVPFSTV VSAAREMHDR LDALGLVSFC KTTGGKGLHV 750
    VTPLAINKRK PLSWAEAKSF AHDVCQQMAR DNPDLYLIKM TKSLRNGRIF 800
    LDYLRNDRMA TAVAPLSPRA RPGATVSMPL TWTQVKSDLD PKRFTIRTVP 850
    ALLSKSSAWE DYSDGQRPLE QAIKRLSKVS NAA 883
    Length:883
    Mass (Da):97,473
    Last modified:November 25, 2008 - v1
    Checksum:i72212D3782726957
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001193 Genomic DNA. Translation: ACI58880.1.
    RefSeqiYP_002277980.1. NC_011366.1.

    Genome annotation databases

    EnsemblBacteriaiACI58880; ACI58880; Rleg2_5705.
    GeneIDi6977096.
    KEGGirlt:Rleg2_5705.
    PATRICi23120480. VBIRhiLeg95088_0092.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001193 Genomic DNA. Translation: ACI58880.1 .
    RefSeqi YP_002277980.1. NC_011366.1.

    3D structure databases

    ProteinModelPortali B6A397.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 395492.Rleg2_5705.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACI58880 ; ACI58880 ; Rleg2_5705 .
    GeneIDi 6977096.
    KEGGi rlt:Rleg2_5705.
    PATRICi 23120480. VBIRhiLeg95088_0092.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci RLEG395492:GJB3-5772-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of plasmid 2 of Rhizobium leguminosarum bv. trifolii WSM2304."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R.
      , Ardley J., Tiwari R.P., O'Hara G., Howieson J., Brau L., Reeve W.
      Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: WSM2304Imported.

    Entry informationi

    Entry nameiB6A397_RHILW
    AccessioniPrimary (citable) accession number: B6A397
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 25, 2008
    Last sequence update: November 25, 2008
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported, PlasmidImported

    External Data

    Dasty 3