B6A0D6 (B6A0D6_RHILW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
D-amino acid dehydrogenase small subunit HAMAP MF_01202
EC=1.4.99.1 HAMAP MF_01202

Gene names

Name:	dadA HAMAP MF_01202
Ordered Locus Names:	Rleg2_4831

Encoded on

Plasmid pRLG201 EMBL ACI58070.1

Organism

Rhizobium leguminosarum bv. trifolii (strain WSM2304) [Complete proteome] [HAMAP]

Taxonomic identifier

395492 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium

Protein attributes

Sequence length	416 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Oxidative deamination of D-amino acids By similarity. HAMAP MF_01202 SAAS SAAS023080
Catalytic activity	A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202 SAAS SAAS023080
Cofactor	FAD By similarity. HAMAP MF_01202 SAAS SAAS023080
Pathway	Amino-acid degradation; D-alanine degradation; NH(3) and pyruvate from D-alanine: step 1/1. HAMAP MF_01202
Subunit structure	Heterodimer of a small and a large subunit By similarity. HAMAP MF_01202 SAAS SAAS023080
Sequence similarities	Belongs to the DadA oxidoreductase family. HAMAP MF_01202

Ontologies

Keywords
Domain	Signal EMBL ACI58070.1
Ligand	FAD HAMAP MF_01202 SAAS SAAS023080 Flavoprotein HAMAP MF_01202 SAAS SAAS023080
Molecular function	Oxidoreductase HAMAP MF_01202 SAAS SAAS023080 EMBL ACI58070.1
Technical term	Complete proteome Plasmid EMBL ACI58070.1
Gene Ontology (GO)
Biological process	alanine catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	D-amino-acid dehydrogenase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 21	21	Potential EMBL ACI58070.1
	Chain	22 – 416	395	Potential EMBL ACI58070.1		PRO_5000404417
Regions
	Nucleotide binding	3 – 17	15	FAD By similarity HAMAP MF_01202

Sequences

	Sequence		Length	Mass (Da)
	B6A0D6 [UniParc]. Last modified November 25, 2008. Version 1. Checksum: 551094553C4E97C6	FASTA	416	44,950
	10 20 30 40 50 60 MKVIVLGAGI VGVTSAYQLA KAGHEVTVVD RQKGPALETS FANAGEVSFG YCSPWAAPGI 70 80 90 100 110 120 PAKAMKWLFM KHAPLILRPK LDLAMLSWMA RMLSNCTSER YAINKSRMLR LADYSRIALA 130 140 150 160 170 180 ELRAETGIAY DERMQGTLQL FRTQQQLEAS AKDVKALAAD GIPYEVLDRD GCIRFEPALK 190 200 210 220 230 240 HVRDKIVGGL LTPKDETGDC FKFTNALAAK AEALGVRFAY DTTIKALDVE AARVRGVITD 250 260 270 280 290 300 RERTGADAVV VALGSYSPLL LKSFGIKLPV YPVKGYSLTI PITDASRAPE STVMDETFKI 310 320 330 340 350 360 AITRLGDRIR VGGMAEISGY TNDLGFARRS TLEHSVTDLF PGGDLSKASF WSGLRPMTPD 370 380 390 400 410 GTPVIGPTKI GGLFLNTGHG TLGWTMSTGS ARLISDLVGG RTPEIDARDL AINRYG

References

[1]

"Complete sequence of plasmid 1 of Rhizobium leguminosarum bv. trifolii WSM2304." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R. , Ardley J., Tiwari R.P., O'Hara G., Howieson J., Brau L., Reeve W. Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: WSM2304.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001192 Genomic DNA. Translation: ACI58070.1.
RefSeq	YP_002278810.1. NC_011368.1.
3D structure databases
ProteinModelPortal	B6A0D6.
ModBase	Search...
Protein-protein interaction databases
STRING	B6A0D6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6977925.
GenomeReviews	Gene locus Rleg2_4831 in contig CP001192_GR.
KEGG	rlt:Rleg2_4831.
PATRIC	23122223. VBIRhiLeg95088_0963.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG729204.
OMA	LEHAGGQ.
ProtClustDB	PRK00711.
Family and domain databases
HAMAP	MF_01202. DadA. [Tree]
InterPro	IPR023080. D-aa_DH_ssu_DadA. IPR006076. FAD-dep_OxRdtase. [Graphical view]
KO	K00285.
Pfam	PF01266. DAO. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B6A0D6_RHILW

Accession

Primary (citable) accession number: B6A0D6

Entry history

Integrated into UniProtKB/TrEMBL:	November 25, 2008
Last sequence update:	November 25, 2008
Last modified:	December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)