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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Rleg2_1908

Organism
Rhizobium leguminosarum bv. trifolii (strain WSM2304)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciRLEG395492:GJB3-1939-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Rleg2_1908Imported
OrganismiRhizobium leguminosarum bv. trifolii (strain WSM2304)Imported
Taxonomic identifieri395492 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000008330 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi395492.Rleg2_1908.

Structurei

3D structure databases

ProteinModelPortaliB5ZQR5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000220639.
KOiK05343.
OMAiEIGWGDF.
OrthoDBiEOG6RVFV2.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

B5ZQR5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MINDLWYKNA VIYCLSVETF MDANGDGVGD FQGLMRRLDY LSGLGVTAIW
60 70 80 90 100
LMPFQTSPGR DDGYDVSDYY NVDPRYGSLG DFVEFTHGAK QRGIRVLIDL
110 120 130 140 150
VINHTSKDHP WFQGARSDPH SPYRDWYVWS EKKPANADQG MVFPGVQKTT
160 170 180 190 200
WTHDEKARAY YFHRFYDHQP DLNTSNPEVQ AEILKIMGFW IQLGVSGFRM
210 220 230 240 250
DAAPFIIATK GADVSKPVEQ FDMLRKFREF LQWRLGDSII LAEANILPKD
260 270 280 290 300
NFEYFGNDGD RMQMMFNFQV NQALFYALAS ADTRPLKKAM ETTKPRPATA
310 320 330 340 350
QWGLFLRNHD ELDLGRLSEK QRGAVFAAFG PEKDMQLYDR GIRRRLAPML
360 370 380 390 400
GGDRRRIEMA YSLLFSLPGT PVIRYGDEIG MGDDLTLPER NCARTPMQWS
410 420 430 440 450
TEPEGGFTKS RKPVSPVIKD GPYGFQHVNV AEQRRDPNSL LNWTERMIRM
460 470 480 490 500
RKEAPEIGWG DFAVVDTGDD GVLALRYDWR GNSVLILHNL HGQPSEVTFD
510 520 530 540 550
PDVGEDGRQL IDIADGASSE ADEKGFHTVR LDAYGYRWYR VGGLDYLLRR

REI
Length:553
Mass (Da):63,315
Last modified:November 24, 2008 - v1
Checksum:i939A399A3DC2D743
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001191 Genomic DNA. Translation: ACI55193.1.
RefSeqiYP_002281419.1. NC_011369.1.

Genome annotation databases

EnsemblBacteriaiACI55193; ACI55193; Rleg2_1908.
KEGGirlt:Rleg2_1908.
PATRICi23127858. VBIRhiLeg95088_3751.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001191 Genomic DNA. Translation: ACI55193.1.
RefSeqiYP_002281419.1. NC_011369.1.

3D structure databases

ProteinModelPortaliB5ZQR5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi395492.Rleg2_1908.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACI55193; ACI55193; Rleg2_1908.
KEGGirlt:Rleg2_1908.
PATRICi23127858. VBIRhiLeg95088_3751.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000220639.
KOiK05343.
OMAiEIGWGDF.
OrthoDBiEOG6RVFV2.

Enzyme and pathway databases

BioCyciRLEG395492:GJB3-1939-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Rhizobium leguminosarum bv. trifolii WSM2304."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Yates R.
    , Ardley J., Tiwari R.P., O'Hara G., Howieson J., Brau L., Reeve W.
    Submitted (SEP-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM2304Imported.

Entry informationi

Entry nameiB5ZQR5_RHILW
AccessioniPrimary (citable) accession number: B5ZQR5
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2008
Last sequence update: November 24, 2008
Last modified: March 31, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.