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B5ZCH5 (B5ZCH5_GLUDA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Arginine--tRNA ligase HAMAP-Rule MF_00123
EC=6.1.1.19 HAMAP-Rule MF_00123
Alternative name(s):
Arginyl-tRNA synthetase HAMAP-Rule MF_00123
Gene names
Name:argS HAMAP-Rule MF_00123
Ordered Locus Names:Gdia_0443 EMBL ACI50239.1
OrganismGluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) [Complete proteome] [HAMAP] EMBL ACI50239.1
Taxonomic identifier272568 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhodospirillales › Acetobacteraceae › Gluconacetobacter ›

Protein attributes

Sequence length597 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP-Rule MF_00123

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00123

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00123.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. RuleBase RU003489 HAMAP-Rule MF_00123

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Motif130 – 14011"HIGH" region By similarity HAMAP-Rule MF_00123

Sequences

Sequence LengthMass (Da)Tools
B5ZCH5 [UniParc].

Last modified November 25, 2008. Version 1.
Checksum: C318D12F25D2C5BF

FASTA59764,294
        10         20         30         40         50         60 
MSDSLFVRYL SHVRDALRRI VPDLPDEVAA RVELTPTRDP AHGDMATNAA LLAAKIARRR 

        70         80         90        100        110        120 
PAEIAADLAA ALAGVPGVAK AEPAGPGFVN VTLDAAVLRS IVPAVLGAGE SYGDAALGQG 

       130        140        150        160        170        180 
VRVNVEYVSA NPTGPMHVGH CRGAVVGDAL ANLLAKAGYG VTKEYYINDA GAQVIALAWA 

       190        200        210        220        230        240 
TYWRYLQVIG TTMGQEEFAA LVPGGIQYGG DYLVPVGRAL AEAHGTALAE PGAQPAAPEH 

       250        260        270        280        290        300 
WLPTVKSFVV AQMMAMIRQD LDALGVRHDV FTSEAKILAD GITDRAIARL DAQGLLYEGV 

       310        320        330        340        350        360 
LEPPKGKLPE DWEARPQTLF RSTAFGDDVD RPLRKSDGSN TYFANDIGYH DDKIRRGADL 

       370        380        390        400        410        420 
LIDVWGADHG GYVTRMKAAV KALGKDGGTV DFDVLLCQIV RIVRDGQPVR MSKRAGTFVT 

       430        440        450        460        470        480 
LRDLIDEVGR DAVRFTMLTR KADAQMEFDL DQVVAQTRDN PVFYVQYAHA RCRSVLRAAQ 

       490        500        510        520        530        540 
EMLGAQDVAP ATLAQAALDG IESDAELALL RRIAQWPRTV EGAAQAHEPH RIAFYLGELA 

       550        560        570        580        590 
GDFHTLWNRG RDDATLRFLQ EDDLAATRAK LALVEATATV IRSGLAVLGV TPVEEMR

« Hide

References

[1]"Complete sequence of chromosome of Gluconacetobacter diazotrophicus PAl 5."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Triplett E.W.
Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49037 / DSM 5601 / PAl5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001189 Genomic DNA. Translation: ACI50239.1.
RefSeqYP_002274854.1. NC_011365.1.

3D structure databases

ProteinModelPortalB5ZCH5.
ModBaseSearch...

Protein-protein interaction databases

STRING272568.GDI_2225.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACI50239; ACI50239; Gdia_0443.
GeneID6973837.
KEGGgdj:Gdia_0443.
PATRIC22049272. VBIGluDia203729_0452.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0018.
HOGENOMHOG000247214.
KOK01887.
ProtClustDBPRK01611.

Family and domain databases

Gene3D3.30.1360.70. 1 hit.
3.40.50.620. 1 hit.
HAMAPMF_00123. Arg_tRNA_synth.
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-ligase_Ia.
IPR015945. Arg-tRNA-synth_Ia_core.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
PANTHERPTHR11956. PTHR11956. 1 hit.
PfamPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
[Graphical view]
PRINTSPR01038. TRNASYNTHARG.
SMARTSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMSSF55190. Arg-tRNA-synth_Ic_N. 1 hit.
SSF47323. tRNAsyn_1a_bind. 1 hit.
TIGRFAMsTIGR00456. argS. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB5ZCH5_GLUDA
AccessionPrimary (citable) accession number: B5ZCH5
Entry history
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: May 1, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info