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Protein

HTH-type transcriptional regulator YidZ

Gene

yidZ

Organism
Escherichia coli O157:H7 (strain EC4115 / EHEC)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Involved in anaerobic NO protection.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi25 – 44H-T-H motifUniRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional regulator YidZUniRule annotation
Gene namesi
Name:yidZUniRule annotation
Ordered Locus Names:ECH74115_5142
OrganismiEscherichia coli O157:H7 (strain EC4115 / EHEC)
Taxonomic identifieri444450 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10001481941 – 319HTH-type transcriptional regulator YidZAdd BLAST319

Structurei

3D structure databases

ProteinModelPortaliB5YXB5
SMRiB5YXB5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 65HTH lysR-typeUniRule annotationAdd BLAST58

Phylogenomic databases

HOGENOMiHOG000103694
OMAiYRYRSVS

Family and domain databases

CDDicd08417 PBP2_Nitroaromatics_like, 1 hit
Gene3Di1.10.10.10, 1 hit
HAMAPiMF_01607 HTH_type_YidZ, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR023746 Tscrpt_reg_YidZ
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
IPR037402 YidZ_PBP2
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

B5YXB5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKSITTLDL NLLLCLQLLM QERSVTKAAK RMNVTPSAVS KSLAKLRAWF
60 70 80 90 100
DDPLFVNSPL GLSPTPLMVS MEQNLAEWMQ MSNLLLDKPH HQTPRGLKFE
110 120 130 140 150
LAAESPLMMI MLNALSKQIY QRYPQATIKL RNWDYDSLDA ITRGEVDIGF
160 170 180 190 200
SGRESHPRSR ELLSSLPLAI DYEVLFSDVP CVWLRKDHPA LHEKWDLDTF
210 220 230 240 250
LRYPHISICW EQSDTWALDN VLQELGRERT IAMSLPEFEQ SLFMAAQPDN
260 270 280 290 300
LLLATAPRYC QYYNQLHQLP LVALPLPFDE SQQKKLEVPF TLLWHKRNSH
310
NPKIVWLRDT IKNLYASMA
Length:319
Mass (Da):36,915
Last modified:November 25, 2008 - v1
Checksum:i94805F18BDC7BCFB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001164 Genomic DNA Translation: ACI36598.1
RefSeqiWP_000748496.1, NC_011353.1

Genome annotation databases

EnsemblBacteriaiACI36598; ACI36598; ECH74115_5142
KEGGiecf:ECH74115_5142

Entry informationi

Entry nameiYIDZ_ECO5E
AccessioniPrimary (citable) accession number: B5YXB5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: November 25, 2008
Last modified: March 28, 2018
This is version 62 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

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