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Protein
Submitted name:

DNA ligase D, 3'-phosphoesterase domain

Gene

ligD

Organism
Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionLigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase D, 3'-phosphoesterase domainImported
Gene namesi
Name:ligDImported
Ordered Locus Names:THEYE_A0546Imported
OrganismiThermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)Imported
Taxonomic identifieri289376 [NCBI]
Taxonomic lineageiBacteriaNitrospiraeNitrospiralesNitrospiraceaeThermodesulfovibrio
Proteomesi
  • UP000000718 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi289376.THEYE_A0546.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 108LigD_NInterPro annotationAdd BLAST102

Phylogenomic databases

eggNOGiENOG4107YW7. Bacteria.
COG1793. LUCA.
HOGENOMiHOG000046158.
InParanoidiB5YJH4.
OMAiHFDFRLE.
OrthoDBiPOG091H0AZ9.

Family and domain databases

InterProiView protein in InterPro
IPR014144. LigD_PE_domain.
PfamiView protein in Pfam
PF13298. LigD_N. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.

Sequencei

Sequence statusi: Complete.

B5YJH4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPYFVVHEHH AKKLHFDLRL EKDGVLKSWA IPKGPSMNPQ DKRLAIQVED
60 70 80 90 100
HALEYGNFEG IIPEGQYGAG KVYIWDKGQY STVKGSPEEG QWEIFMEGEI
110 120 130
LKGNFVLVKL KGKSDEWLFI KKKDKFADYN FKLKLKFP
Length:138
Mass (Da):16,030
Last modified:November 25, 2008 - v1
Checksum:i210B1E1959C1188D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001147 Genomic DNA. Translation: ACI20837.1.
RefSeqiWP_012545568.1. NC_011296.1.
YP_002248389.1. NC_011296.1.

Genome annotation databases

EnsemblBacteriaiACI20837; ACI20837; THEYE_A0546.
GeneIDi6943291.
KEGGitye:THEYE_A0546.
PATRICifig|289376.4.peg.540.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001147 Genomic DNA. Translation: ACI20837.1.
RefSeqiWP_012545568.1. NC_011296.1.
YP_002248389.1. NC_011296.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi289376.THEYE_A0546.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACI20837; ACI20837; THEYE_A0546.
GeneIDi6943291.
KEGGitye:THEYE_A0546.
PATRICifig|289376.4.peg.540.

Phylogenomic databases

eggNOGiENOG4107YW7. Bacteria.
COG1793. LUCA.
HOGENOMiHOG000046158.
InParanoidiB5YJH4.
OMAiHFDFRLE.
OrthoDBiPOG091H0AZ9.

Family and domain databases

InterProiView protein in InterPro
IPR014144. LigD_PE_domain.
PfamiView protein in Pfam
PF13298. LigD_N. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiB5YJH4_THEYD
AccessioniPrimary (citable) accession number: B5YJH4
Entry historyiIntegrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: June 7, 2017
This is version 43 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.