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Protein
Submitted name:

LigD protein

Gene

ligD

Organism
Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ligase activity Source: UniProtKB-KW
Complete GO annotation...

Enzyme and pathway databases

BioCyciTYEL289376:GH9L-544-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
LigD proteinImported
Gene namesi
Name:ligDImported
Ordered Locus Names:THEYE_A0546Imported
OrganismiThermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)Imported
Taxonomic identifieri289376 [NCBI]
Taxonomic lineageiBacteriaNitrospiraeNitrospiralesNitrospiraceaeThermodesulfovibrio
ProteomesiUP000000718 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi289376.THEYE_A0546.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000046158.
InParanoidiB5YJH4.
OMAiHEHHAKK.
OrthoDBiEOG661H49.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.

Sequencei

Sequence statusi: Complete.

B5YJH4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPYFVVHEHH AKKLHFDLRL EKDGVLKSWA IPKGPSMNPQ DKRLAIQVED
60 70 80 90 100
HALEYGNFEG IIPEGQYGAG KVYIWDKGQY STVKGSPEEG QWEIFMEGEI
110 120 130
LKGNFVLVKL KGKSDEWLFI KKKDKFADYN FKLKLKFP
Length:138
Mass (Da):16,030
Last modified:November 25, 2008 - v1
Checksum:i210B1E1959C1188D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001147 Genomic DNA. Translation: ACI20837.1.
RefSeqiYP_002248389.1. NC_011296.1.

Genome annotation databases

EnsemblBacteriaiACI20837; ACI20837; THEYE_A0546.
GeneIDi6943291.
KEGGitye:THEYE_A0546.
PATRICi23908115. VBITheYel104483_0540.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001147 Genomic DNA. Translation: ACI20837.1.
RefSeqiYP_002248389.1. NC_011296.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi289376.THEYE_A0546.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACI20837; ACI20837; THEYE_A0546.
GeneIDi6943291.
KEGGitye:THEYE_A0546.
PATRICi23908115. VBITheYel104483_0540.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000046158.
InParanoidiB5YJH4.
OMAiHEHHAKK.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciTYEL289376:GH9L-544-MONOMER.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The complete genome sequence of Thermodesulfovibrio yellowstonii strain ATCC 51303 / DSM 11347 / YP87."
    Dodson R.J., Durkin A.S., Wu M., Eisen J., Sutton G.
    Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51303 / DSM 11347 / YP87Imported.

Entry informationi

Entry nameiB5YJH4_THEYD
AccessioniPrimary (citable) accession number: B5YJH4
Entry historyi
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: April 29, 2015
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.