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B5YJH4

- B5YJH4_THEYD

UniProt

B5YJH4 - B5YJH4_THEYD

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Protein
Submitted name:

DNA ligase D, 3'-phosphoesterase domain

Gene
ligD, THEYE_A0546
Organism
Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ligase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTYEL289376:GH9L-544-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase D, 3'-phosphoesterase domainImported
Gene namesi
Name:ligDImported
Ordered Locus Names:THEYE_A0546Imported
OrganismiThermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)Imported
Taxonomic identifieri289376 [NCBI]
Taxonomic lineageiBacteriaNitrospiraeNitrospiralesNitrospiraceaeThermodesulfovibrio
ProteomesiUP000000718: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi289376.THEYE_A0546.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000046158.
KOiK01971.
OMAiMRDEYAN.
OrthoDBiEOG661H49.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.

Sequencei

Sequence statusi: Complete.

B5YJH4-1 [UniParc]FASTAAdd to Basket

« Hide

MPYFVVHEHH AKKLHFDLRL EKDGVLKSWA IPKGPSMNPQ DKRLAIQVED    50
HALEYGNFEG IIPEGQYGAG KVYIWDKGQY STVKGSPEEG QWEIFMEGEI 100
LKGNFVLVKL KGKSDEWLFI KKKDKFADYN FKLKLKFP 138
Length:138
Mass (Da):16,030
Last modified:November 25, 2008 - v1
Checksum:i210B1E1959C1188D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001147 Genomic DNA. Translation: ACI20837.1.
RefSeqiYP_002248389.1. NC_011296.1.

Genome annotation databases

EnsemblBacteriaiACI20837; ACI20837; THEYE_A0546.
GeneIDi6943291.
KEGGitye:THEYE_A0546.
PATRICi23908115. VBITheYel104483_0540.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001147 Genomic DNA. Translation: ACI20837.1 .
RefSeqi YP_002248389.1. NC_011296.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 289376.THEYE_A0546.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACI20837 ; ACI20837 ; THEYE_A0546 .
GeneIDi 6943291.
KEGGi tye:THEYE_A0546.
PATRICi 23908115. VBITheYel104483_0540.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000046158.
KOi K01971.
OMAi MRDEYAN.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci TYEL289376:GH9L-544-MONOMER.

Family and domain databases

InterProi IPR014144. LigD_PE_domain.
[Graphical view ]
Pfami PF13298. LigD_N. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The complete genome sequence of Thermodesulfovibrio yellowstonii strain ATCC 51303 / DSM 11347 / YP87."
    Dodson R.J., Durkin A.S., Wu M., Eisen J., Sutton G.
    Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51303 / DSM 11347 / YP87.

Entry informationi

Entry nameiB5YJH4_THEYD
AccessioniPrimary (citable) accession number: B5YJH4
Entry historyi
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: May 14, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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