B5YJH4 (B5YJH4_THEYD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D, 3'-phosphoesterase domain EMBL ACI20837.1

Gene names

Name:	ligD EMBL ACI20837.1
Ordered Locus Names:	THEYE_A0546

Organism

Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) [Reference proteome] [HAMAP] EMBL ACI20837.1

Taxonomic identifier

289376 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Nitrospirae › Nitrospira › Nitrospirales › Nitrospiraceae › Thermodesulfovibrio › Thermodesulfovibrio yellowstonii

Protein attributes

Sequence length	138 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACI20837.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular_function	ligase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B5YJH4 [UniParc]. Last modified November 25, 2008. Version 1. Checksum: 210B1E1959C1188D	FASTA	138	16,030
	10 20 30 40 50 60 MPYFVVHEHH AKKLHFDLRL EKDGVLKSWA IPKGPSMNPQ DKRLAIQVED HALEYGNFEG 70 80 90 100 110 120 IIPEGQYGAG KVYIWDKGQY STVKGSPEEG QWEIFMEGEI LKGNFVLVKL KGKSDEWLFI 130 KKKDKFADYN FKLKLKFP

References

[1]

"The complete genome sequence of Thermodesulfovibrio yellowstonii strain ATCC 51303 / DSM 11347 / YP87." Dodson R.J., Durkin A.S., Wu M., Eisen J., Sutton G. Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51303 / DSM 11347 / YP87.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001147 Genomic DNA. Translation: ACI20837.1.
RefSeq	YP_002248389.1. NC_011296.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	289376.THEYE_A0546.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACI20837; ACI20837; THEYE_A0546.
GeneID	6943291.
KEGG	tye:THEYE_A0546.
PATRIC	23908115. VBITheYel104483_0540.
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000046158.
KO	K01971.
OMA	KGWLFFK.
Family and domain databases
InterPro	IPR014144. LigD_PE_domain. [Graphical view]
Pfam	PF13298. LigD_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B5YJH4_THEYD

Accession

Primary (citable) accession number: B5YJH4

Entry history

Integrated into UniProtKB/TrEMBL:	November 25, 2008
Last sequence update:	November 25, 2008
Last modified:	May 1, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)