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B5YJH4

- B5YJH4_THEYD

UniProt

B5YJH4 - B5YJH4_THEYD

Protein
Submitted name:

DNA ligase D, 3'-phosphoesterase domain

Gene

ligD

Organism
Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 1 (25 Nov 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ligase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciTYEL289376:GH9L-544-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase D, 3'-phosphoesterase domainImported
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:THEYE_A0546Imported
    OrganismiThermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)Imported
    Taxonomic identifieri289376 [NCBI]
    Taxonomic lineageiBacteriaNitrospiraeNitrospiralesNitrospiraceaeThermodesulfovibrio
    ProteomesiUP000000718: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi289376.THEYE_A0546.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000046158.
    KOiK01971.
    OMAiMRDEYAN.
    OrthoDBiEOG661H49.

    Family and domain databases

    InterProiIPR014144. LigD_PE_domain.
    [Graphical view]
    PfamiPF13298. LigD_N. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B5YJH4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPYFVVHEHH AKKLHFDLRL EKDGVLKSWA IPKGPSMNPQ DKRLAIQVED    50
    HALEYGNFEG IIPEGQYGAG KVYIWDKGQY STVKGSPEEG QWEIFMEGEI 100
    LKGNFVLVKL KGKSDEWLFI KKKDKFADYN FKLKLKFP 138
    Length:138
    Mass (Da):16,030
    Last modified:November 25, 2008 - v1
    Checksum:i210B1E1959C1188D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001147 Genomic DNA. Translation: ACI20837.1.
    RefSeqiYP_002248389.1. NC_011296.1.

    Genome annotation databases

    EnsemblBacteriaiACI20837; ACI20837; THEYE_A0546.
    GeneIDi6943291.
    KEGGitye:THEYE_A0546.
    PATRICi23908115. VBITheYel104483_0540.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001147 Genomic DNA. Translation: ACI20837.1 .
    RefSeqi YP_002248389.1. NC_011296.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 289376.THEYE_A0546.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACI20837 ; ACI20837 ; THEYE_A0546 .
    GeneIDi 6943291.
    KEGGi tye:THEYE_A0546.
    PATRICi 23908115. VBITheYel104483_0540.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000046158.
    KOi K01971.
    OMAi MRDEYAN.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci TYEL289376:GH9L-544-MONOMER.

    Family and domain databases

    InterProi IPR014144. LigD_PE_domain.
    [Graphical view ]
    Pfami PF13298. LigD_N. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome sequence of Thermodesulfovibrio yellowstonii strain ATCC 51303 / DSM 11347 / YP87."
      Dodson R.J., Durkin A.S., Wu M., Eisen J., Sutton G.
      Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 51303 / DSM 11347 / YP87Imported.

    Entry informationi

    Entry nameiB5YJH4_THEYD
    AccessioniPrimary (citable) accession number: B5YJH4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 25, 2008
    Last sequence update: November 25, 2008
    Last modified: October 1, 2014
    This is version 28 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3