B5YF62 (B5YF62_DICT6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
S-adenosylmethionine decarboxylase proenzyme HAMAP MF_00464
Short name=AdoMetDC HAMAP MF_00464
Short name=SAMDC HAMAP MF_00464
EC=4.1.1.50 HAMAP MF_00464

Gene names

Name:	speH HAMAP MF_00464
Ordered Locus Names:	DICTH_1351

Organism

Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) [Complete proteome] [HAMAP]

Taxonomic identifier

309799 [NCBI]

Taxonomic lineage

Bacteria › Dictyoglomi › Dictyoglomales › Dictyoglomaceae › Dictyoglomus

Protein attributes

Sequence length	142 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine By similarity. HAMAP MF_00464
Catalytic activity	S-adenosyl-L-methionine = (5-deoxy-5-adenosyl)(3-aminopropyl)-methylsulfonium salt + CO2. HAMAP MF_00464
Cofactor	Pyruvoyl group By similarity. HAMAP MF_00464
Pathway	Amine and polyamine biosynthesis; S-adenosylmethioninamine biosynthesis; S-adenosylmethioninamine from S-adenosyl-L-methionine: step 1/1. HAMAP MF_00464
Subunit structure	Heterotetramer of two alpha and two beta chains arranged as a dimer of alpha/beta heterodimers By similarity. HAMAP MF_00464
Post-translational modification	Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The post-translation cleavage follows an unusual pathway, termed non-hydrolytic serinolysis, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl group blocking the N-terminus of the alpha chain By similarity. HAMAP MF_00464
Sequence similarities	Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily. HAMAP MF_00464

Ontologies

Keywords
Biological process	Polyamine biosynthesis HAMAP MF_00464 Spermidine biosynthesis HAMAP MF_00464
Ligand	Pyruvate HAMAP MF_00464 S-adenosyl-L-methionine HAMAP MF_00464 Schiff base HAMAP MF_00464
Molecular function	Decarboxylase HAMAP MF_00464 Lyase
PTM	Autocatalytic cleavage HAMAP MF_00464 Zymogen HAMAP MF_00464
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	S-adenosylmethioninamine biosynthetic process Inferred from electronic annotation. Source: HAMAP spermidine biosynthetic process Inferred from electronic annotation. Source: HAMAP
Molecular function	adenosylmethionine decarboxylase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	67	1	Schiff-base intermediate with substrate; via pyruvic acid By similarity HAMAP MF_00464
	Active site	72	1	Proton acceptor; for processing activity By similarity HAMAP MF_00464
	Active site	87	1	Proton donor; for catalytic activity By similarity HAMAP MF_00464
	Site	66 – 67	2	Cleavage (non-hydrolytic); by autolysis By similarity HAMAP MF_00464
Amino acid modifications
	Modified residue	67	1	Pyruvic acid (Ser); by autocatalysis By similarity HAMAP MF_00464

Sequences

	Sequence		Length	Mass (Da)
	B5YF62 [UniParc]. Last modified November 25, 2008. Version 1. Checksum: 79B05749C4B15242	FASTA	142	16,009
	10 20 30 40 50 60 MKITGKSLGR HILAEMYNCN REILNDVEKI KEIMVKAAIE AGAEVVEVVF HKFSPYGVSG 70 80 90 100 110 120 VVVISESHLA IHTWPEYGFA AADLFTCGDH VNPWKAFEYL NNYLQAEQFI TFEAKRGILP 130 140 IEAGNFTYKP EENKKEVKET VG

References

[1]	"The complete genome sequence of Dictyoglomus thermophilum strain ATCC 35947 / DSM 3960 / H-6-12." Dodson R.J., Durkin A.S., Wu M., Eisen J., Sutton G. Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001146 Genomic DNA. Translation: ACI19352.1.
RefSeq	YP_002251170.1. NC_011297.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B5YF62.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6944906.
GenomeReviews	Gene locus DICTH_1351 in contig CP001146_GR.
KEGG	dth:DICTH_1351.
PATRIC	21807326. VBIDicThe33784_1294.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG485559.
OMA	SYFFKFS.
ProtClustDB	CLSK2409695.
Family and domain databases
HAMAP	MF_00464. AdoMetDC_1. [Tree]
InterPro	IPR003826. S-AdoMet_decarboxylase-bac/arc. IPR016067. S-AdoMet_deCO2ase_core. IPR017716. S-AdoMet_deCOase_pro-enz. [Graphical view]
Gene3D	G3DSA:3.60.90.10. SAM_decarbox. 1 hit.
KO	K01611.
Pfam	PF02675. AdoMet_dc. 1 hit. [Graphical view]
SUPFAM	SSF56276. S-AdenosylMet_decarbase_core. 1 hit.
TIGRFAMs	TIGR03330. SAM_DCase_Bsu. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B5YF62_DICT6

Accession

Primary (citable) accession number: B5YF62

Entry history

Integrated into UniProtKB/TrEMBL:	November 25, 2008
Last sequence update:	November 25, 2008
Last modified:	December 14, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)