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B5YDP0 (B5YDP0_DICT6) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Asparagine--tRNA ligase HAMAP MF_00534
EC=6.1.1.22 HAMAP MF_00534
Alternative name(s):
Asparaginyl-tRNA synthetase HAMAP MF_00534
Gene names
Name:asnS HAMAP MF_00534 EMBL ACI19611.1
Ordered Locus Names:DICTH_0782
OrganismDictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) [Complete proteome] [HAMAP]
Taxonomic identifier309799 [NCBI]
Taxonomic lineageBacteria › Dictyoglomi › Dictyoglomales › Dictyoglomaceae › Dictyoglomus

Protein attributes

Sequence length433 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-asparagine + tRNA(Asn) = AMP + diphosphate + L-asparaginyl-tRNA(Asn). HAMAP MF_00534 SAAS SAAS004522

Subunit structure

Homodimer By similarity. HAMAP MF_00534

Subcellular location

Cytoplasm By similarity HAMAP MF_00534.

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. HAMAP MF_00534 RuleBase RU003746

Sequences

Sequence LengthMass (Da)Tools
B5YDP0 [UniParc].

Last modified November 25, 2008. Version 1.
Checksum: 19C10E0BB473F299

FASTA43350,409
        10         20         30         40         50         60 
MSAPWVYIED IPKIQEGEIE VRGWLFNKRS SGKIVFLIIR DGTGYIQGVA TLDNFTQDQL 

        70         80         90        100        110        120 
ESLEKIPIES SLIVVGDLKK EPRAPGGYEL LLKSVNVVSY SEEYPIQKKD HSIDFLLERR 

       130        140        150        160        170        180 
HLWIRSRKQN AILRIRSEVV KAIRDFLDEK GFVLIDAPIL TPSACEGTTT LFELDYFDLG 

       190        200        210        220        230        240 
KAYLSQSGQL YMEAACMAFG KVYCFGPAFR AEKSKTRRHL TEFWMVEPEM AFWDWQDNMR 

       250        260        270        280        290        300 
LQEELVSYIV QRVLEKRKRE LEILERDTKP LEKVVPPFPR ITYREAIEIL KRNGQNVEYG 

       310        320        330        340        350        360 
DDFGGDEETI ISSQFDRPVF IHHYPAKIKP FYMQPDPENP EEVLNNDLLA PEGYGEIIGG 

       370        380        390        400        410        420 
SQRIHDLKLL EKKLEEYNLP KEAFEWYLDL RRYGSVPHSG FGLGIERTVA WICGLKHVRE 

       430 
AIPFPRMIYR IYP

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References

[1]"The complete genome sequence of Dictyoglomus thermophilum strain ATCC 35947 / DSM 3960 / H-6-12."
Dodson R.J., Durkin A.S., Wu M., Eisen J., Sutton G.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001146 Genomic DNA. Translation: ACI19611.1.
RefSeqYP_002250648.1. NC_011297.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGB5YDP0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6945903.
GenomeReviewsGene locus DICTH_0782 in contig CP001146_GR.
KEGGdth:DICTH_0782.
PATRIC21806202. VBIDicThe33784_0769.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG745843.
OMADHLPQET.
ProtClustDBPRK03932.

Family and domain databases

HAMAPMF_00534. Asn_tRNA_synth.
[Tree]
InterProIPR004364. aa-tRNA-synt_II.
IPR018150. aa-tRNA-synt_II-like.
IPR006195. aa-tRNA-synth_II.
IPR004522. Asn-tRNA-synth_IIb.
IPR002312. Asp/Asn-tRNA-synth_IIb.
IPR012340. NA-bd_OB-fold.
IPR016027. NA-bd_OB-fold-like.
IPR004365. NA-bd_OB_tRNA-helicase.
[Graphical view]
Gene3DG3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KOK01893.
PANTHERPTHR22594. aa-tRNA-synt_II. 1 hit.
PTHR22594:SF6. PTHR22594:SF6. 1 hit.
PfamPF00152. tRNA-synt_2. 1 hit.
PF01336. tRNA_anti. 1 hit.
[Graphical view]
PRINTSPR01042. TRNASYNTHASP.
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR00457. AsnS. 1 hit.
PROSITEPS50862. AA_TRNA_LIGASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB5YDP0_DICT6
AccessionPrimary (citable) accession number: B5YDP0
Entry history
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: January 25, 2012
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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