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B5Y8P0

- B5Y8P0_COPPD

UniProt

B5Y8P0 - B5Y8P0_COPPD

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Protein

Phosphopentomutase

Gene
deoB, COPRO5265_0790
Organism
Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Phosphotransfer between the C1 and C5 carbon atoms of pentose By similarity.UniRule annotationSAAS annotations

Catalytic activityi

2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotationSAAS annotations
Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotationSAAS annotations

Cofactori

Binds 1 or 2 manganese ions By similarity.UniRule annotationSAAS annotations

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi17 – 171Manganese By similarityUniRule annotation
Metal bindingi290 – 2901Manganese By similarityUniRule annotation
Metal bindingi326 – 3261Manganese By similarityUniRule annotation
Metal bindingi327 – 3271Manganese By similarityUniRule annotation
Metal bindingi339 – 3391Manganese By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: InterPro
  2. manganese ion binding Source: UniProtKB-HAMAP
  3. phosphopentomutase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
  2. cellular metabolic compound salvage Source: InterPro
  3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotationsImported

Keywords - Ligandi

ManganeseUniRule annotationSAAS annotations, Metal-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciCPRO309798:GH7M-783-MONOMER.
UniPathwayiUPA00087; UER00173.

Names & Taxonomyi

Protein namesi
Recommended name:
PhosphopentomutaseUniRule annotation (EC:5.4.2.7UniRule annotation)
Alternative name(s):
Phosphodeoxyribomutase
Gene namesi
Name:deoBUniRule annotationImported
Ordered Locus Names:COPRO5265_0790Imported
OrganismiCoprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT)Imported
Taxonomic identifieri309798 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermodesulfobiaceaeCoprothermobacter
ProteomesiUP000001732: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Interactioni

Protein-protein interaction databases

STRINGi309798.COPRO5265_0790.

Structurei

3D structure databases

ProteinModelPortaliB5Y8P0.

Family & Domainsi

Sequence similaritiesi

Belongs to the phosphopentomutase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1015.
HOGENOMiHOG000008159.
KOiK01839.
OMAiIRTKDNM.
OrthoDBiEOG6R5C7J.

Family and domain databases

Gene3Di3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPiMF_00740. Phosphopentomut.
InterProiIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamiPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFiPIRSF001491. Ppentomutase. 1 hit.
SUPFAMiSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsiTIGR01696. deoB. 1 hit.

Sequencei

Sequence statusi: Complete.

B5Y8P0-1 [UniParc]FASTAAdd to Basket

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MTMKEKVFKR VFLVVIDSFG VGAEPDWAEY GDDPSLNTAL HVIDDRPAPS    50
FLWSRGLGYL LKEEPIKQPS VVAKLQELSK GKDSTTGHWE IAGLVMTTPF 100
PTYPHGFPPE VMEEFERRIG TKTLGNFPAS GTEIIKQLGE EHMRTGYPIV 150
YTSADSVFQI AAHEDVIPVE DLYRMCEIAR ELLTGDHAVA RVIARPFAGK 200
PGEFYRTPRR RDFSLPPLGH TILDELVEKG IPVVAVGKIH DLFAGRGISQ 250
SVHTENDAEG IKALQELSKT FQQRGLVFAN LVDSDMIYGH RRNVEGYYQN 300
IMMIDEGLSL LYDNLTNEDL LIVTADHGND PTFPKHTDHT REYVSFIACS 350
PSFTEGSFLG TLRGYVHIAQ TVIEALGVES ARKWGRTLLK EDV 393
Length:393
Mass (Da):43,934
Last modified:November 25, 2008 - v1
Checksum:iA46D958A29C535D6
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001145 Genomic DNA. Translation: ACI18211.1.
RefSeqiYP_002247137.1. NC_011295.1.

Genome annotation databases

EnsemblBacteriaiACI18211; ACI18211; COPRO5265_0790.
GeneIDi6943937.
KEGGicpo:COPRO5265_0790.
PATRICi21474414. VBICopPro72829_0750.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001145 Genomic DNA. Translation: ACI18211.1 .
RefSeqi YP_002247137.1. NC_011295.1.

3D structure databases

ProteinModelPortali B5Y8P0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 309798.COPRO5265_0790.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACI18211 ; ACI18211 ; COPRO5265_0790 .
GeneIDi 6943937.
KEGGi cpo:COPRO5265_0790.
PATRICi 21474414. VBICopPro72829_0750.

Phylogenomic databases

eggNOGi COG1015.
HOGENOMi HOG000008159.
KOi K01839.
OMAi IRTKDNM.
OrthoDBi EOG6R5C7J.

Enzyme and pathway databases

UniPathwayi UPA00087 ; UER00173 .
BioCyci CPRO309798:GH7M-783-MONOMER.

Family and domain databases

Gene3Di 3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPi MF_00740. Phosphopentomut.
InterProi IPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view ]
Pfami PF01676. Metalloenzyme. 1 hit.
[Graphical view ]
PIRSFi PIRSF001491. Ppentomutase. 1 hit.
SUPFAMi SSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsi TIGR01696. deoB. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The complete genome sequence of Coprothermobacter proteolyticus strain ATCC 5245 / DSM 5265 / BT."
    Dodson R.J., Durkin A.S., Wu M., Eisen J., Sutton G.
    Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35245 / DSM 5265 / BT.

Entry informationi

Entry nameiB5Y8P0_COPPD
AccessioniPrimary (citable) accession number: B5Y8P0
Entry historyi
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: June 11, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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