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B5Y8P0

- B5Y8P0_COPPD

UniProt

B5Y8P0 - B5Y8P0_COPPD

Protein

Phosphopentomutase

Gene

deoB

Organism
Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 44 (01 Oct 2014)
      Sequence version 1 (25 Nov 2008)
      Previous versions | rss
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    Functioni

    Phosphotransfer between the C1 and C5 carbon atoms of pentose.UniRule annotationSAAS annotation

    Catalytic activityi

    2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotationSAAS annotation
    Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotationSAAS annotation

    Cofactori

    Binds 1 or 2 manganese ions.UniRule annotationSAAS annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi17 – 171ManganeseUniRule annotation
    Metal bindingi290 – 2901ManganeseUniRule annotation
    Metal bindingi326 – 3261ManganeseUniRule annotation
    Metal bindingi327 – 3271ManganeseUniRule annotation
    Metal bindingi339 – 3391ManganeseUniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: InterPro
    2. manganese ion binding Source: UniProtKB-HAMAP
    3. phosphopentomutase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
    2. cellular metabolic compound salvage Source: InterPro
    3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Ligandi

    ManganeseUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciCPRO309798:GH7M-783-MONOMER.
    UniPathwayiUPA00087; UER00173.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    PhosphopentomutaseUniRule annotation (EC:5.4.2.7UniRule annotation)
    Alternative name(s):
    PhosphodeoxyribomutaseUniRule annotation
    Gene namesi
    Name:deoBUniRule annotationImported
    Ordered Locus Names:COPRO5265_0790Imported
    OrganismiCoprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT)Imported
    Taxonomic identifieri309798 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermodesulfobiaceaeCoprothermobacter
    ProteomesiUP000001732: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi309798.COPRO5265_0790.

    Structurei

    3D structure databases

    ProteinModelPortaliB5Y8P0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the phosphopentomutase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1015.
    HOGENOMiHOG000008159.
    KOiK01839.
    OMAiIRTKDNM.
    OrthoDBiEOG6R5C7J.

    Family and domain databases

    Gene3Di3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPiMF_00740. Phosphopentomut.
    InterProiIPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view]
    PfamiPF01676. Metalloenzyme. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001491. Ppentomutase. 1 hit.
    SUPFAMiSSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsiTIGR01696. deoB. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B5Y8P0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTMKEKVFKR VFLVVIDSFG VGAEPDWAEY GDDPSLNTAL HVIDDRPAPS    50
    FLWSRGLGYL LKEEPIKQPS VVAKLQELSK GKDSTTGHWE IAGLVMTTPF 100
    PTYPHGFPPE VMEEFERRIG TKTLGNFPAS GTEIIKQLGE EHMRTGYPIV 150
    YTSADSVFQI AAHEDVIPVE DLYRMCEIAR ELLTGDHAVA RVIARPFAGK 200
    PGEFYRTPRR RDFSLPPLGH TILDELVEKG IPVVAVGKIH DLFAGRGISQ 250
    SVHTENDAEG IKALQELSKT FQQRGLVFAN LVDSDMIYGH RRNVEGYYQN 300
    IMMIDEGLSL LYDNLTNEDL LIVTADHGND PTFPKHTDHT REYVSFIACS 350
    PSFTEGSFLG TLRGYVHIAQ TVIEALGVES ARKWGRTLLK EDV 393
    Length:393
    Mass (Da):43,934
    Last modified:November 25, 2008 - v1
    Checksum:iA46D958A29C535D6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001145 Genomic DNA. Translation: ACI18211.1.
    RefSeqiYP_002247137.1. NC_011295.1.

    Genome annotation databases

    EnsemblBacteriaiACI18211; ACI18211; COPRO5265_0790.
    GeneIDi6943937.
    KEGGicpo:COPRO5265_0790.
    PATRICi21474414. VBICopPro72829_0750.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001145 Genomic DNA. Translation: ACI18211.1 .
    RefSeqi YP_002247137.1. NC_011295.1.

    3D structure databases

    ProteinModelPortali B5Y8P0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 309798.COPRO5265_0790.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACI18211 ; ACI18211 ; COPRO5265_0790 .
    GeneIDi 6943937.
    KEGGi cpo:COPRO5265_0790.
    PATRICi 21474414. VBICopPro72829_0750.

    Phylogenomic databases

    eggNOGi COG1015.
    HOGENOMi HOG000008159.
    KOi K01839.
    OMAi IRTKDNM.
    OrthoDBi EOG6R5C7J.

    Enzyme and pathway databases

    UniPathwayi UPA00087 ; UER00173 .
    BioCyci CPRO309798:GH7M-783-MONOMER.

    Family and domain databases

    Gene3Di 3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPi MF_00740. Phosphopentomut.
    InterProi IPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view ]
    Pfami PF01676. Metalloenzyme. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001491. Ppentomutase. 1 hit.
    SUPFAMi SSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsi TIGR01696. deoB. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome sequence of Coprothermobacter proteolyticus strain ATCC 5245 / DSM 5265 / BT."
      Dodson R.J., Durkin A.S., Wu M., Eisen J., Sutton G.
      Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 35245 / DSM 5265 / BTImported.

    Entry informationi

    Entry nameiB5Y8P0_COPPD
    AccessioniPrimary (citable) accession number: B5Y8P0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 25, 2008
    Last sequence update: November 25, 2008
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3