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B5Y8A2 (B5Y8A2_COPPD) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Arginine--tRNA ligase HAMAP MF_00123
EC=6.1.1.19 HAMAP MF_00123
Alternative name(s):
Arginyl-tRNA synthetase HAMAP MF_00123
Gene names
Name:argS HAMAP MF_00123 EMBL ACI17331.1
Ordered Locus Names:COPRO5265_0649
OrganismCoprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) [Complete proteome] [HAMAP]
Taxonomic identifier309798 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Thermoanaerobacterales › Thermodesulfobiaceae › Coprothermobacter

Protein attributes

Sequence length526 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP MF_00123

Subunit structure

Monomer By similarity. HAMAP MF_00123

Subcellular location

Cytoplasm By similarity HAMAP MF_00123.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. HAMAP MF_00123 RuleBase RU003489

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Motif114 – 12411"HIGH" region By similarity HAMAP MF_00123

Sequences

Sequence LengthMass (Da)Tools
B5Y8A2 [UniParc].

Last modified November 25, 2008. Version 1.
Checksum: DA07E10DEF4BA5AD

FASTA52660,675
        10         20         30         40         50         60 
MTDVIRTAIT ESTQKVFGLS TEDMPALDIQ FTPDITMGDY AVPIGFVLAK KLRTAPEKIA 

        70         80         90        100        110        120 
QTIAENLQGP FRAEAVKGYV NVTMDDDWWL DRLSQGFISY PQYSGKVLVE YVSANPTGPI 

       130        140        150        160        170        180 
HIGHGRGAVV GSVLANLLDR VYDFADSEFY VNDAGEQIRK FCKSVEIRIR ELKGEDVELP 

       190        200        210        220        230        240 
EDAYHGDYVV DIAKSILDRY NWDALSEDEQ WNVLWNDAVD MMRKWHKETL EKLGVTMKVW 

       250        260        270        280        290        300 
TSERLIRQEG WPERVIQLLQ DKGYAYEQDG ALWFKSTIFG DDKDRVLVKS NGEYTYYLVD 

       310        320        330        340        350        360 
IAYHMEKIHR GYNVLINVWG ADHIGHVPRM NAALTALGFP DCLTVVLVQT VRFWRQGVAV 

       370        380        390        400        410        420 
AMSKRKGEFL TLDELIDEIG KDAARIMFIT RSVDATIDFD IEVAKQKAMD NPVYYIQYAY 

       430        440        450        460        470        480 
VRAKNILTRT EERQFGSSVG FDPHERTLLR LLNAFQERMV LAVRKLDPFV IESYAWELSD 

       490        500        510        520 
AFHKFYQFDR VIGSEYENAR WKLVERFTEV MEELFTLLGI EKLERM

« Hide

References

[1]"The complete genome sequence of Coprothermobacter proteolyticus strain ATCC 5245 / DSM 5265 / BT."
Dodson R.J., Durkin A.S., Wu M., Eisen J., Sutton G.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001145 Genomic DNA. Translation: ACI17331.1.
RefSeqYP_002246999.1. NC_011295.1.

3D structure databases

ProteinModelPortalB5Y8A2.
ModBaseSearch...

Protein-protein interaction databases

STRINGB5Y8A2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6944856.
GenomeReviewsGene locus COPRO5265_0649 in contig CP001145_GR.
KEGGcpo:COPRO5265_0649.
PATRIC21474132. VBICopPro72829_0612.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG695395.
OMAETIRGCL.

Family and domain databases

HAMAPMF_00123. Arg_tRNA_synth.
[Tree]
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-synth_Ia.
IPR015945. Arg-tRNA-synth_Ia_core.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
Gene3DG3DSA:3.30.1360.70. Arg-tRNA-synth_Ic_N. 1 hit.
G3DSA:3.40.50.620. Rossmann-like_a/b/a_fold. 1 hit.
KOK01887.
PANTHERPTHR11956. Arg_tRNA-synt_1c. 1 hit.
PfamPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
[Graphical view]
PRINTSPR01038. TRNASYNTHARG.
SMARTSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMSSF55190. Arg-tRNA-synth_Ic_N. 1 hit.
SSF47323. tRNAsyn_1a_bind. 1 hit.
TIGRFAMsTIGR00456. ArgS. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB5Y8A2_COPPD
AccessionPrimary (citable) accession number: B5Y8A2
Entry history
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: January 25, 2012
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info