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Protein
Submitted name:

Predicted protein

Gene

PHATR_800

Organism
Phaeodactylum tricornutum (strain CCAP 1055/1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. AMP deaminase activity Source: InterPro

GO - Biological processi

  1. IMP salvage Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted proteinImported
Gene namesi
ORF Names:PHATR_800Imported
OrganismiPhaeodactylum tricornutum (strain CCAP 1055/1)Imported
Taxonomic identifieri556484 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaBacillariophyceaeBacillariophycidaeNaviculalesPhaeodactylaceaePhaeodactylum
ProteomesiUP000000759: Chromosome 3

Interactioni

Protein-protein interaction databases

STRINGi2850.JGI800.

Structurei

3D structure databases

ProteinModelPortaliB5Y4Z2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000092200.
InParanoidiB5Y4Z2.
KOiK01490.

Family and domain databases

InterProiIPR001365. A/AMP_deaminase_dom.
IPR006329. AMPD.
[Graphical view]
PANTHERiPTHR11359. PTHR11359. 1 hit.
PfamiPF00962. A_deaminase. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

B5Y4Z2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
DFSQDYGRLV EMVSEGAMRS FCFQRLQMLS ASFKMHLTIN GTIEREEQSN
60 70 80 90 100
LLGTDFYRTM KIDNHIHAAA APSAKQFVEF VRRKLETEPD TVVSSDGRTL
110 120 130 140 150
VQVFEDAGLD KDHLTIDAFD VLADYSVYKR FDNFNSKYSP FRMADMRRIF
160 170 180 190 200
LKTTNHINGR YFAELLKIVI DRHEKSKGHN SACEMRLSIY GMERHEWYDL
210 220 230 240 250
ALWVLRDWQH EDFPGPMTSG NNRWHIQIPR LWRIFSQKPI RDGQPQRSFL
260 270 280 290 300
EMIENLFVPL FEATLHPEQH PEVSELLKHI VAFDSVDDEG ALEENCSCQR
310 320 330 340 350
PHEWTTKKNP SYWWQLYFLW SNLEVLNHLR EARGLNSIAF RPHAGETGDP
360 370 380 390 400
MHLASTYMLC QSINHGVGLD MQVSLQYLYY LDQIGLAMSP LSNNFLFTKI
410 420 430 440 450
ADNPFAKYFR RGMNVTISTD DPLLFHMSDD ALLEEYSVAR ATFDLSMTDI
460 470 480 490 500
MEIARNSVMQ SGFEVDFKKN WLGSDYQRGL TFCDEKITHV PLIRAKFRAE

HLALE
Length:505
Mass (Da):58,867
Last modified:November 25, 2008 - v1
Checksum:i783A81DB4B885848
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported
Non-terminal residuei505 – 5051Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001142 Genomic DNA. Translation: ACI65851.1.
RefSeqiXP_002186381.1. XM_002186345.1.
UniGeneiPtc.5073.

Genome annotation databases

GeneIDi7204392.
KEGGipti:PHATR_800.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001142 Genomic DNA. Translation: ACI65851.1.
RefSeqiXP_002186381.1. XM_002186345.1.
UniGeneiPtc.5073.

3D structure databases

ProteinModelPortaliB5Y4Z2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi2850.JGI800.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi7204392.
KEGGipti:PHATR_800.

Phylogenomic databases

HOGENOMiHOG000092200.
InParanoidiB5Y4Z2.
KOiK01490.

Family and domain databases

InterProiIPR001365. A/AMP_deaminase_dom.
IPR006329. AMPD.
[Graphical view]
PANTHERiPTHR11359. PTHR11359. 1 hit.
PfamiPF00962. A_deaminase. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
    Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.
    , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
    Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCAP 1055/1Imported.
  2. Cited for: GENOME REANNOTATION.
    Strain: CCAP 1055/1Imported.

Entry informationi

Entry nameiB5Y4Z2_PHATC
AccessioniPrimary (citable) accession number: B5Y4Z2
Entry historyi
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: March 4, 2015
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.