Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Predicted protein

Gene

PHATR_46880

Organism
Phaeodactylum tricornutum (strain CCAP 1055/1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted proteinImported
Gene namesi
ORF Names:PHATR_46880Imported
OrganismiPhaeodactylum tricornutum (strain CCAP 1055/1)Imported
Taxonomic identifieri556484 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaBacillariophyceaeBacillariophycidaeNaviculalesPhaeodactylaceaePhaeodactylum
ProteomesiUP000000759 Componenti: Chromosome 11

Interactioni

Protein-protein interaction databases

STRINGi2850.JGI46880.

Structurei

3D structure databases

ProteinModelPortaliB5Y428.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000232662.
InParanoidiB5Y428.
KOiK00799.

Family and domain databases

Gene3Di1.20.1050.10. 1 hit.
3.40.30.10. 1 hit.
InterProiIPR010987. Glutathione-S-Trfase_C-like.
IPR004045. Glutathione_S-Trfase_N.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PfamiPF13417. GST_N_3. 1 hit.
[Graphical view]
SUPFAMiSSF47616. SSF47616. 1 hit.
SSF52833. SSF52833. 1 hit.
PROSITEiPS50405. GST_CTER. 1 hit.
PS50404. GST_NTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B5Y428-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTIRIQPTVP SPKIYYYSYC YCWWYMGLVT LAVSCILRPP ALLVHGWATT
60 70 80 90 100
PTRVLGIVGR TSALVASSAE TTRHRHGASL SMSQSPSSSS FGSILGNLVS
110 120 130 140 150
SSWNRSNSGP SAVPGLDQAL IESPRSSWNE IRSLLESRMT TNAERNFRNN
160 170 180 190 200
LSTGYGVASP LHNVRLYDEA NQESDVRVTF YRDSASWCPY CQKVWMTLEE
210 220 230 240 250
KRIPYRVERV NMRCYGDKPA SFFRIQPGGQ IPVAVIDGKV YGQSNDILYA
260 270 280 290 300
LEEAFPQHKS LAPPQGMAME AQRLLRLERS LFSVWMYWLT GGRQRDEFRA
310 320 330 340 350
TLAEVETALA QNTDGPFFLG RDVTMVDCMF APFLERMAAS LLYFKGFQFR
360 370 380 390 400
VAPGVPTDYP AINAWFDAME TRESYQLTKS DYYTHCWDLP PQLGGCVYEK
410 420 430 440 450
GGEPFEQAIN GDRRLDGTHK SWELPLAPHN GGIEPDWEWA GDEAAARREA
460 470 480 490 500
VERVSANHQA IVKFAARGAG TKGLVPFSAP LADPKATPNE AVLQAVDTCL
510 520 530 540 550
QIVCLALLEG TDKYDTDMVK VAHIIQEKGG QEFTNGVVAS LAYLRDRVGV
560 570
PRDMRLPAAR QLRAHLNWSV GKLLDT
Length:576
Mass (Da):64,278
Last modified:November 25, 2008 - v1
Checksum:iE1F40D40BA5E88D7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001141 Genomic DNA. Translation: ACI65237.1.
RefSeqiXP_002185767.1. XM_002185731.1.
UniGeneiPtc.2695.

Genome annotation databases

EnsemblProtistsiPhatr3_J46880.t1; Phatr3_J46880.p1; Phatr3_J46880.
GeneIDi7204724.
KEGGipti:PHATR_46880.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001141 Genomic DNA. Translation: ACI65237.1.
RefSeqiXP_002185767.1. XM_002185731.1.
UniGeneiPtc.2695.

3D structure databases

ProteinModelPortaliB5Y428.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi2850.JGI46880.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiPhatr3_J46880.t1; Phatr3_J46880.p1; Phatr3_J46880.
GeneIDi7204724.
KEGGipti:PHATR_46880.

Phylogenomic databases

HOGENOMiHOG000232662.
InParanoidiB5Y428.
KOiK00799.

Family and domain databases

Gene3Di1.20.1050.10. 1 hit.
3.40.30.10. 1 hit.
InterProiIPR010987. Glutathione-S-Trfase_C-like.
IPR004045. Glutathione_S-Trfase_N.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PfamiPF13417. GST_N_3. 1 hit.
[Graphical view]
SUPFAMiSSF47616. SSF47616. 1 hit.
SSF52833. SSF52833. 1 hit.
PROSITEiPS50405. GST_CTER. 1 hit.
PS50404. GST_NTER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
    Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.
    , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
    Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCAP 1055/1Imported.
  2. Cited for: GENOME REANNOTATION.
    Strain: CCAP 1055/1Imported.

Entry informationi

Entry nameiB5Y428_PHATC
AccessioniPrimary (citable) accession number: B5Y428
Entry historyi
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: March 4, 2015
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.