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B5Y3V2 (B5Y3V2_PHATC) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length651 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
B5Y3V2 [UniParc].

Last modified November 25, 2008. Version 1.
Checksum: 5D75D42E604851D4

FASTA65172,330
        10         20         30         40         50         60 
MPYSVLCQAF TDIEAVTSRL LIQQIFTTLL RQIAVQNPVD LYPVLYLASN DVAPAYECVE 

        70         80         90        100        110        120 
LGVGDSILVR AIGEATGTNP AMVKKRYEEI GDLGDVAKSF KSKQRTLGGF FQKSVAPKKP 

       130        140        150        160        170        180 
LTAAQVLHVF REIAQTKGNQ SQKWKVENIK KLIVQATEAT ETKYIVRGLQ GKLRIGLAQS 

       190        200        210        220        230        240 
TVLIGLAHAL ALTPPITLCP HQPTLAELED YPAEARQYLD DTLPSEKRME AAVAIVKKAY 

       250        260        270        280        290        300 
SEVPSYDAIV NGAAKVPLHQ LHRACTLTPG IPVAPMLAKP TKSIQEVLKR LSGLRFTCEY 

       310        320        330        340        350        360 
KYDGERAQVH LLPDGTTRVF SRNLLDTSEK YPEVPLFVKE ACRNVESFVL DAEVVAYNNK 

       370        380        390        400        410        420 
TGQLVPFQIL STRKKTEESA ETAKVQVIVQ AFDLMYLNGK SLLNQTLAAR RSLLMEHFEA 

       430        440        450        460        470        480 
VPGKFQFAKS LDHKEDGDTT VLEEFLDSAV KGQCEGLMVK TLEVNAIYEP SRRSLNWLKL 

       490        500        510        520        530        540 
KKDYLDGLGD SVDLVPLGAY HGRGKRTGFY GAYLLACYDS ETEEFQSVCK IGTGFSEEDL 

       550        560        570        580        590        600 
KSLAENLNQH VIPTKSQQYS VSDVLECDVW FDAVQVWEIK AADLSKSSTH RGAEGKTGEE 

       610        620        630        640        650 
GRGIGLRFPR FERIRDDKRP EEATTSDQIL EMYYQQDAIA GNDDDVEDDG I 

« Hide

References

« Hide 'large scale' references
[1]"The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. expand/collapse author list , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCAP 1055/1 EMBL ACI65374.1.
[2]Diatom Consortium
Grigoriev I., Grimwood J., Kuo A., Otillar R.P., Salamov A., Detter J.C., Lindquist E., Shapiro H., Lucas S., Glavina del Rio T., Pitluck S., Rokhsar D., Bowler C.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: CCAP 1055/1 EMBL ACI65374.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001141 Genomic DNA. Translation: ACI65374.1.
RefSeqXP_002185904.1. XM_002185868.1.
UniGenePtc.7514.

3D structure databases

ProteinModelPortalB5Y3V2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING2850.JGI51005.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsPhatr51005; Phatr51005; Phatr51005.
GeneID7204673.
KEGGpti:PHATR_51005.

Phylogenomic databases

HOGENOMHOG000036006.
KOK10747.
ProtClustDBCLSN2711193.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB5Y3V2_PHATC
AccessionPrimary (citable) accession number: B5Y3V2
Entry history
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: November 13, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)