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B5Y3V2

- B5Y3V2_PHATC

UniProt

B5Y3V2 - B5Y3V2_PHATC

Protein

DNA ligase

Gene

PHATR_51005

Organism
Phaeodactylum tricornutum (strain CCAP 1055/1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 37 (01 Oct 2014)
      Sequence version 1 (25 Nov 2008)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:PHATR_51005Imported
    OrganismiPhaeodactylum tricornutum (strain CCAP 1055/1)Imported
    Taxonomic identifieri556484 [NCBI]
    Taxonomic lineageiEukaryotaStramenopilesBacillariophytaBacillariophyceaeBacillariophycidaeNaviculalesPhaeodactylaceaePhaeodactylum
    ProteomesiUP000000759: Chromosome 11

    Interactioni

    Protein-protein interaction databases

    STRINGi2850.JGI51005.

    Structurei

    3D structure databases

    ProteinModelPortaliB5Y3V2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000036006.
    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B5Y3V2-1 [UniParc]FASTAAdd to Basket

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    MPYSVLCQAF TDIEAVTSRL LIQQIFTTLL RQIAVQNPVD LYPVLYLASN    50
    DVAPAYECVE LGVGDSILVR AIGEATGTNP AMVKKRYEEI GDLGDVAKSF 100
    KSKQRTLGGF FQKSVAPKKP LTAAQVLHVF REIAQTKGNQ SQKWKVENIK 150
    KLIVQATEAT ETKYIVRGLQ GKLRIGLAQS TVLIGLAHAL ALTPPITLCP 200
    HQPTLAELED YPAEARQYLD DTLPSEKRME AAVAIVKKAY SEVPSYDAIV 250
    NGAAKVPLHQ LHRACTLTPG IPVAPMLAKP TKSIQEVLKR LSGLRFTCEY 300
    KYDGERAQVH LLPDGTTRVF SRNLLDTSEK YPEVPLFVKE ACRNVESFVL 350
    DAEVVAYNNK TGQLVPFQIL STRKKTEESA ETAKVQVIVQ AFDLMYLNGK 400
    SLLNQTLAAR RSLLMEHFEA VPGKFQFAKS LDHKEDGDTT VLEEFLDSAV 450
    KGQCEGLMVK TLEVNAIYEP SRRSLNWLKL KKDYLDGLGD SVDLVPLGAY 500
    HGRGKRTGFY GAYLLACYDS ETEEFQSVCK IGTGFSEEDL KSLAENLNQH 550
    VIPTKSQQYS VSDVLECDVW FDAVQVWEIK AADLSKSSTH RGAEGKTGEE 600
    GRGIGLRFPR FERIRDDKRP EEATTSDQIL EMYYQQDAIA GNDDDVEDDG 650
    I 651
    Length:651
    Mass (Da):72,330
    Last modified:November 25, 2008 - v1
    Checksum:i5D75D42E604851D4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001141 Genomic DNA. Translation: ACI65374.1.
    RefSeqiXP_002185904.1. XM_002185868.1.
    UniGeneiPtc.7514.

    Genome annotation databases

    EnsemblProtistsiPhatr51005; Phatr51005; Phatr51005.
    GeneIDi7204673.
    KEGGipti:PHATR_51005.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001141 Genomic DNA. Translation: ACI65374.1 .
    RefSeqi XP_002185904.1. XM_002185868.1.
    UniGenei Ptc.7514.

    3D structure databases

    ProteinModelPortali B5Y3V2.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 2850.JGI51005.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi Phatr51005 ; Phatr51005 ; Phatr51005 .
    GeneIDi 7204673.
    KEGGi pti:PHATR_51005.

    Phylogenomic databases

    HOGENOMi HOG000036006.
    KOi K10747.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
      Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.
      , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
      Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CCAP 1055/1Imported.
    2. Cited for: GENOME REANNOTATION.
      Strain: CCAP 1055/1Imported.

    Entry informationi

    Entry nameiB5Y3V2_PHATC
    AccessioniPrimary (citable) accession number: B5Y3V2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 25, 2008
    Last sequence update: November 25, 2008
    Last modified: October 1, 2014
    This is version 37 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3