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B5Y3R9 (B5Y3R9_PHATC) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
ORF Names:PHATR_36821 EMBL ACI65357.1
OrganismPhaeodactylum tricornutum (strain CCAP 1055/1) [Reference proteome]
Taxonomic identifier556484 [NCBI]
Taxonomic lineageEukaryotaStramenopilesBacillariophytaBacillariophyceaeBacillariophycidaeNaviculalesPhaeodactylaceaePhaeodactylum

Protein attributes

Sequence length386 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region287 – 2882Substrate binding By similarity PIRSR PIRSR000114-2

Sites

Active site2231Proton acceptor By similarity PIRSR PIRSR000114-1
Binding site1341Substrate By similarity PIRSR PIRSR000114-2

Sequences

Sequence LengthMass (Da)Tools
B5Y3R9 [UniParc].

Last modified November 25, 2008. Version 1.
Checksum: 4A7282AAF2608FB5

FASTA38641,740
        10         20         30         40         50         60 
MDSNPQNSSD QLDKVCIIGS GNWGSAIATL VGRNCERLPF FESQVNMWVF EEMVELEDGS 

        70         80         90        100        110        120 
QKKLTEIINS RHENVKYLPG IPLPSNVVAT PDLAEACRDA TLLIFVLPHQ FLPRLLPVIR 

       130        140        150        160        170        180 
ESAHPTCRGV SLIKGLDFDS ERKLPILISN TIADAMGPEF QCGVLMGANV ASEVALGQMC 

       190        200        210        220        230        240 
ESTLASPFGP PADELTRLVF DAPSFRVQHV PDVAGAEVCG ALKNVVALGA GFVDGVGLGS 

       250        260        270        280        290        300 
NTKAALLRVG LREMAKFCHM FFDGVQDNTF TQSCGMADLI TTCYGGRNRK CAEAFAKERL 

       310        320        330        340        350        360 
GSDGLCDEAM ACEQKWEKIE AKLLNGQKLQ GTLTAKEVHA ILDSRGVLNA FPLIKTIHEI 

       370        380 
SFKGKPVQQI VDGIIDTNEH GASSHL 

« Hide

References

« Hide 'large scale' references
[1]"The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. expand/collapse author list , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCAP 1055/1 EMBL ACI65357.1.
[2]Diatom Consortium
Grigoriev I., Grimwood J., Kuo A., Otillar R.P., Salamov A., Detter J.C., Lindquist E., Shapiro H., Lucas S., Glavina del Rio T., Pitluck S., Rokhsar D., Bowler C.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: CCAP 1055/1 EMBL ACI65357.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001141 Genomic DNA. Translation: ACI65357.1.
RefSeqXP_002185887.1. XM_002185851.1.
UniGenePtc.5681.

3D structure databases

ProteinModelPortalB5Y3R9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING2850.JGI36821.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsPhatr36821; Phatr36821; Phatr36821.
GeneID7204657.
KEGGpti:PHATR_36821.

Phylogenomic databases

HOGENOMHOG000246855.
KOK00006.

Family and domain databases

Gene3D1.10.1040.10. 1 hit.
3.40.50.720. 1 hit.
InterProIPR008927. 6-PGluconate_DH_C-like.
IPR013328. DH_multihelical.
IPR006168. G3P_DH_NAD-dep.
IPR006109. G3P_DH_NAD-dep_C.
IPR017751. G3P_DH_NAD-dep_euk.
IPR011128. G3P_DH_NAD-dep_N.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PANTHERPTHR11728. PTHR11728. 1 hit.
PfamPF07479. NAD_Gly3P_dh_C. 1 hit.
PF01210. NAD_Gly3P_dh_N. 1 hit.
[Graphical view]
PIRSFPIRSF000114. Glycerol-3-P_dh. 1 hit.
PRINTSPR00077. GPDHDRGNASE.
SUPFAMSSF48179. SSF48179. 1 hit.
TIGRFAMsTIGR03376. glycerol3P_DH. 1 hit.
PROSITEPS00957. NAD_G3PDH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB5Y3R9_PHATC
AccessionPrimary (citable) accession number: B5Y3R9
Entry history
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: June 11, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)