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Protein
Submitted name:

Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

Gene

GBGT1

Organism
Salmo salar (Atlantic salmon)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

TransferaseImported

Protein family/group databases

CAZyiGT6. Glycosyltransferase Family 6.

Names & Taxonomyi

Protein namesi
Submitted name:
Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1Imported
Gene namesi
Name:GBGT1Imported
OrganismiSalmo salar (Atlantic salmon)Imported
Taxonomic identifieri8030 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeSalmo

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Family & Domainsi

Phylogenomic databases

HOVERGENiHBG003563.

Family and domain databases

Gene3Di3.90.550.10. 1 hit.
InterProiIPR005076. Glyco_trans_6.
IPR029044. Nucleotide-diphossugar_trans.
[Graphical view]
PANTHERiPTHR10462. PTHR10462. 1 hit.
PfamiPF03414. Glyco_transf_6. 1 hit.
[Graphical view]
SUPFAMiSSF53448. SSF53448. 1 hit.

Sequencei

Sequence statusi: Complete.

B5X0T3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFSSNVKPY VLLLIAGIFS LLGYVYFSFF SERLNRQITI DEDQKGSRLL
60 70 80 90 100
YKQPSILDGR TDVVSVTPWL APIVWEGTFD PVLIDNIYKP MNLTIATTVF
110 120 130 140 150
AVGKYVRFLQ DFLETAEKHF MVGFNVHYYV FTDRPHDVPS VNLAQGRHLS
160 170 180 190 200
VIQVPGSNRW QEISARRMEI IQTTIERQIR READYIFCLD VDSKFHARWG
210 220 230 240 250
SESLGRLVAV IHPGYYEETR DSFPYERRPA STAYIRMDEG DYYYGGAMFG
260 270 280 290 300
GFVEDVYTLT KVCRKRFEED AGNSIEAAWQ EESHLNRYLL DNKPSKVLSP
310 320 330
EYLWQDLKAK TKEVKVIRFS GVIKNYAEVR PNV
Length:333
Mass (Da):38,685
Last modified:November 25, 2008 - v1
Checksum:iA49EDE658441AFD9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT044652 mRNA. Translation: ACI32914.1.
RefSeqiNP_001133258.1. NM_001139786.1.
UniGeneiSsa.25208.

Genome annotation databases

GeneIDi100194757.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT044652 mRNA. Translation: ACI32914.1.
RefSeqiNP_001133258.1. NM_001139786.1.
UniGeneiSsa.25208.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiGT6. Glycosyltransferase Family 6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi100194757.

Organism-specific databases

CTDi26301.

Phylogenomic databases

HOVERGENiHBG003563.

Family and domain databases

Gene3Di3.90.550.10. 1 hit.
InterProiIPR005076. Glyco_trans_6.
IPR029044. Nucleotide-diphossugar_trans.
[Graphical view]
PANTHERiPTHR10462. PTHR10462. 1 hit.
PfamiPF03414. Glyco_transf_6. 1 hit.
[Graphical view]
SUPFAMiSSF53448. SSF53448. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: BrainImported.
  2. "Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome."
    Leong J.S., Jantzen S.G., von Schalburg K.R., Cooper G.A., Messmer A.M., Liao N.Y., Munro S., Moore R., Holt R.A., Jones S.J., Davidson W.S., Koop B.F.
    BMC Genomics 11:279-279(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: BrainImported.
  3. cGRASP (B.F. Koop & W.S. Davidson)
    Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: BrainImported.

Entry informationi

Entry nameiB5X0T3_SALSA
AccessioniPrimary (citable) accession number: B5X0T3
Entry historyi
Integrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: October 1, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.