B5RQY8 (B5RQY8_BORRA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Translation initiation factor IF-1 HAMAP-Rule MF_00075

Gene names

Name:	infA HAMAP-Rule MF_00075 EMBL ACH94422.1
Ordered Locus Names:	BRE_167 EMBL ACH94422.1

Organism

Borrelia recurrentis (strain A1) [Complete proteome] [HAMAP] EMBL ACH94422.1

Taxonomic identifier

412418 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Spirochaetes › Spirochaetia › Spirochaetales › Spirochaetaceae › Borrelia › Borrelia recurrentis

Protein attributes

Sequence length	73 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3 By similarity. HAMAP-Rule MF_00075 SAAS SAAS004368
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_00075 SAAS SAAS004368.
Sequence similarities	Belongs to the IF-1 family. HAMAP-Rule MF_00075 Contains 1 S1-like domain. HAMAP-Rule MF_00075 RuleBase RU004366 SAAS SAAS004368

Ontologies

Keywords
Biological process	Protein biosynthesis
Cellular component	Cytoplasm HAMAP-Rule MF_00075 SAAS SAAS004368
Molecular function	Initiation factor HAMAP-Rule MF_00075 SAAS SAAS004368 EMBL ACH94422.1
Technical term	Complete proteome
Gene Ontology (GO)
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	translation initiation factor activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Domain	1 – 73	73	S1-like By similarity HAMAP-Rule MF_00075

Sequences

	Sequence		Length	Mass (Da)
	B5RQY8 [UniParc]. Last modified November 4, 2008. Version 1. Checksum: F394ECB464ACE273	FASTA	73	8,392
	10 20 30 40 50 60 MNTKEEAIET EGIVKESLPN TMFRVELKNG HLVLAHLSGK MRKHFIKIVP GDKVKVELSP 70 YDLTKGRIVY REK

References

[1]

"The Genome of Borrelia recurrentis, the Agent of Deadly Louse-Borne Relapsing Fever, Is a Degraded Subset of Tick-Borne Borrelia duttonii." Lescot M., Audic S., Robert C., Nguyen T., Blanc g., Cutler S.J., Wincker P., Couloux A., Claverie J.-M., Raoult D., Drancourt M. PLoS Genet. 4:E1000185-E1000185(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: A1 EMBL ACH94422.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000993 Genomic DNA. Translation: ACH94422.1.
RefSeq	YP_002222643.1. NC_011244.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	412418.BRE_167.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACH94422; ACH94422; BRE_167.
GeneID	6919373.
KEGG	bre:BRE_167.
PATRIC	20569467. VBIBorRec40566_0185.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0361.
HOGENOM	HOG000221323.
KO	K02518.
OMA	KEDSIEM.
ProtClustDB	PRK00276.
Enzyme and pathway databases
BioCyc	BREC412418:GJIA-167-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
HAMAP	MF_00075. IF_1.
InterPro	IPR012340. NA-bd_OB-fold. IPR022967. RNA-binding_domain_S1. IPR006196. RNA-binding_domain_S1_IF1. IPR004368. TIF_IF1. [Graphical view]
Pfam	PF01176. eIF-1a. 1 hit. [Graphical view]
SMART	SM00316. S1. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR00008. infA. 1 hit.
PROSITE	PS50832. S1_IF1_TYPE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B5RQY8_BORRA

Accession

Primary (citable) accession number: B5RQY8

Entry history

Integrated into UniProtKB/TrEMBL:	November 4, 2008
Last sequence update:	November 4, 2008
Last modified:	May 29, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)