B5QXM3 (B5QXM3_SALEP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcriptional repressor EMBL CAR35458.1

Gene names

Name:	cytR EMBL CAR35458.1
Ordered Locus Names:	SEN3884 EMBL CAR35458.1

Organism

Salmonella enteritidis PT4 (strain P125109) [Complete proteome] [HAMAP] EMBL CAR35458.1

Taxonomic identifier

550537 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Salmonella › Salmonella choleraesuis › Salmonella enterica I › Salmonella enteritidis

Protein attributes

Sequence length	341 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH lacI-type DNA-binding domain. SAAS SAAS000843

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS000843 RuleBase RU000708
Ligand	DNA-binding SAAS SAAS000843 RuleBase RU000708
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B5QXM3 [UniParc]. Last modified November 4, 2008. Version 1. Checksum: 2591B663F79276B9	FASTA	341	37,583
	10 20 30 40 50 60 MKSNKQVTAA TMKDVALKAK VSTATVSRAL MNPDKVSQST RSRVEQAALE VGYFPQSMGR 70 80 90 100 110 120 NVKRNESRTI LVIVPDICDP FFSEIIRGIE VTAAEQGYLV LIGDCAHQNQ KEKTFLNLII 130 140 150 160 170 180 TKQIDGMVLL SSRLPFDASV EEQRNLPPMV MSNEFAPELE LPTVHIDNLT AAFNAMNYLL 190 200 210 220 230 240 DLGHKRIGCI AGPEDMPLCH YRLQGYVQAL RRSGIVVDPH YIARGDFTFE AGANALKQLL 250 260 270 280 290 300 EQPLPPTAVF CHSDVMALGA LSWAKRQGLK VPDDLSIIGF DNIALAEFCD PPLTTVAQPR 310 320 330 340 FDIGREAMLL LLDQMQGQNV SSGSRLMDCE LIIRGSTRAL P

References

[1]

"Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways." Thomson N.R., Clayton D.J., Windhorst D., Vernikos G., Davidson S., Churcher C., Quail M.A., Stevens M., Jones M.A., Watson M., Barron A., Layton A., Pickard D., Kingsley R.A., Bignell A., Clark L., Harris B., Ormond D. , Abdellah Z., Brooks K., Cherevach I., Chillingworth T., Woodward J., Norberczak H., Lord A., Arrowsmith C., Jagels K., Moule S., Mungall K., Sanders M., Whitehead S., Chabalgoity J.A., Maskell D., Humphrey T., Roberts M., Barrow P.A., Dougan G., Parkhill J. Genome Res. 18:1624-1637(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: P125109 EMBL CAR35458.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM933172 Genomic DNA. Translation: CAR35458.1.
RefSeq	YP_002245932.1. NC_011294.1.
3D structure databases
ProteinModelPortal	B5QXM3.
ModBase	Search...
Protein-protein interaction databases
STRING	550537.SEN3884. B5QXM3.
Proteomic databases
PRIDE	B5QXM3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6949159.
KEGG	set:SEN3884.
PATRIC	32338480. VBISalEnt14964_3969.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1609.
HOGENOM	HOG000220180.
KO	K05499.
OMA	ESSYITR.
ProtClustDB	PRK11041.
Enzyme and pathway databases
BioCyc	SENT550537:GJFI-3948-MONOMER.
Family and domain databases
Gene3D	1.10.260.40. 1 hit.
InterPro	IPR010982. Lambda_DNA-bd_dom. IPR000843. Tscrpt_reg_HTH_LacI. [Graphical view]
Pfam	PF00356. LacI. 1 hit. [Graphical view]
SMART	SM00354. HTH_LACI. 1 hit. [Graphical view]
SUPFAM	SSF47413. Lambda_like_DNA. 1 hit.
PROSITE	PS00356. HTH_LACI_1. 1 hit. PS50932. HTH_LACI_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B5QXM3_SALEP

Accession

Primary (citable) accession number: B5QXM3

Entry history

Integrated into UniProtKB/TrEMBL:	November 4, 2008
Last sequence update:	November 4, 2008
Last modified:	May 1, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)