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B5MEF5 (B5MEF5_HUMAN) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:SNED1 Ensembl ENSP00000342992
OrganismHomo sapiens (Human) [Reference proteome] Ensembl ENSP00000342992
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length1380 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSP00000342992

Sequences

Sequence LengthMass (Da)Tools
B5MEF5 [UniParc].

Last modified November 3, 2009. Version 2.
Checksum: 2F18B76D79C7D295

FASTA1,380148,699
        10         20         30         40         50         60 
MRHGVAWALL VAAALGLGAR GVRGAVALAD FYPFGAERGD AVTPKQDDGG SGLRPLSVPF 

        70         80         90        100        110        120 
PFFGAEHSGL YVNNNGIISF LKEVSQFTPV AFPIAKDRCV VAAFWADVDN RRAGDVYYRE 

       130        140        150        160        170        180 
ATDPAMLRRA TEDVRHYFPE LLDFNATWVF VATWYRVTFF GGSSSSPVNT FQTVLITDGK 

       190        200        210        220        230        240 
LSFTIFNYES IVWTTGTHAS SGGNATGLGG IAAQAGFNAG DGQRYFSIPG SRTADMAEVE 

       250        260        270        280        290        300 
TTTNVGVPGR WAFRIDDAQV RVGGCGHTTS VCLALRPCLN GGKCIDDCVT GNPSYTCSCL 

       310        320        330        340        350        360 
SGFTGRRCHL DVNECASQPC QNGGTCTHGI NSFRCQCPAG FGGPTCETAQ SPCDTKECQH 

       370        380        390        400        410        420 
GGQCQVENGS AVCVCQAGYT GAACEMDVDD CSPDPCLNGG SCVDLVGNYT CLCAEPFKGL 

       430        440        450        460        470        480 
RCETGDHPVP DACLSAPCHN GGTCVDADQG YVCECPEGFM GLDCRERVPD DCECRNGGRC 

       490        500        510        520        530        540 
LGANTTLCQC PLGFFGLLCE FEITAMPCNM NTQCPDGGYC MEHGGSYLCV CHTDHNASHS 

       550        560        570        580        590        600 
LPSPCDSDPC FNGGSCDAHD DSYTCECPRG FHGKHCEKAR PHLCSSGPCR NGGTCKEAGG 

       610        620        630        640        650        660 
EYHCSCPYRF TGRHCEIGKP DSCASGPCHN GGTCFHYIGK YKCDCPPGFS GRHCEIAPSP 

       670        680        690        700        710        720 
CFRSPCVNGG TCEDRDTDFF CHCQAGYMGR RCQAEVDCGP PEEVKHATLR FNGTRLGAVA 

       730        740        750        760        770        780 
LYACDRGYSL SAPSRIRVCQ PHGVWSEPPQ CLEIDECRSQ PCLHGGSCQD RVAGYLCLCS 

       790        800        810        820        830        840 
TGYEGAHCEL ERDECRAHPC RNGGSCRNLP GAYVCRCPAG FVGVHCETEV DACDSSPCQH 

       850        860        870        880        890        900 
GGRCESGGGA YLCVCPESFF GYHCETVSDP CFSSPCGGRG YCLASNGSHS CTCKVGYTGE 

       910        920        930        940        950        960 
DCAKELFPPT ALKMERVEES GVSISWNPPN GPAARQMLDG YAVTYVSSDG SYRRTDFVDR 

       970        980        990       1000       1010       1020 
TRSSHQLQAL AAGRAYNISV FSVKRNSNNK NDISRPAVLL ARTRPRPVEG FEVTNVTAST 

      1030       1040       1050       1060       1070       1080 
ISVQWALHRI RHATVSGVRV SIRHPEALRD QATDVDRSVD RFTFRALLPG KRYTIQLTTL 

      1090       1100       1110       1120       1130       1140 
SGLRGEEHPT ESLATAPTHV WTRPLPPANL TAARVTATSA HVVWDAPTPG SLLEAYVINV 

      1150       1160       1170       1180       1190       1200 
TTSQSTKSRY VPNGKLASYT VRDLLPGRRY QLSVIAVQST ELGPQHSEPA HLYIITSPRD 

      1210       1220       1230       1240       1250       1260 
GADRRWHQGG HHPRVLKNRP PPARLPELRL LNDHSAPETP TQPPRFSELV DGRGRVSARF 

      1270       1280       1290       1300       1310       1320 
GGSPSKAATV RSHVPGNCSE NPCQNGGTCV PGADAHSCDC GPGFKGRRCE LACIKVSRPC 

      1330       1340       1350       1360       1370       1380 
TRLFSETKAF PVWEGGVCHH VYKRVYRVHQ DICFKESCES TSLKKTPNRK QSKSQTLEKS 

« Hide

References

« Hide 'large scale' references
[1]"Generation and annotation of the DNA sequences of human chromosomes 2 and 4."
Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. expand/collapse author list , Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., Wilson R.K.
Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC005237 Genomic DNA. No translation available.
AC093585 Genomic DNA. No translation available.
AC104809 Genomic DNA. No translation available.
RefSeqXP_006712469.1. XM_006712406.1.
UniGeneHs.471834.

3D structure databases

ProteinModelPortalB5MEF5.
SMRB5MEF5. Positions 273-696, 753-1191, 1278-1311.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEB5MEF5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000342631; ENSP00000342992; ENSG00000162804.
GeneID25992.

Organism-specific databases

HGNCHGNC:24696. SNED1.
GenAtlasSearch...

Phylogenomic databases

HOGENOMHOG000081748.
HOVERGENHBG108495.

Gene expression databases

ArrayExpressB5MEF5.
BgeeB5MEF5.

Family and domain databases

Gene3D2.60.40.10. 3 hits.
InterProIPR000742. EG-like_dom.
IPR001881. EGF-like_Ca-bd_dom.
IPR013032. EGF-like_CS.
IPR000152. EGF-type_Asp/Asn_hydroxyl_site.
IPR018097. EGF_Ca-bd_CS.
IPR003961. Fibronectin_type3.
IPR003645. Fol_N.
IPR009030. Growth_fac_rcpt_N_dom.
IPR013783. Ig-like_fold.
IPR003886. Nidogen_extracell_dom.
IPR000436. Sushi_SCR_CCP.
[Graphical view]
PfamPF00008. EGF. 11 hits.
PF00041. fn3. 3 hits.
PF12661. hEGF. 2 hits.
PF06119. NIDO. 1 hit.
[Graphical view]
SMARTSM00032. CCP. 1 hit.
SM00181. EGF. 10 hits.
SM00179. EGF_CA. 5 hits.
SM00060. FN3. 3 hits.
SM00274. FOLN. 2 hits.
SM00539. NIDO. 1 hit.
[Graphical view]
SUPFAMSSF49265. SSF49265. 2 hits.
SSF57184. SSF57184. 1 hit.
SSF57535. SSF57535. 1 hit.
PROSITEPS00010. ASX_HYDROXYL. 5 hits.
PS00022. EGF_1. 15 hits.
PS01186. EGF_2. 13 hits.
PS50026. EGF_3. 15 hits.
PS01187. EGF_CA. 3 hits.
PS50853. FN3. 3 hits.
PS51220. NIDO. 1 hit.
PS50923. SUSHI. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35478263.

Entry information

Entry nameB5MEF5_HUMAN
AccessionPrimary (citable) accession number: B5MEF5
Entry history
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: November 3, 2009
Last modified: July 9, 2014
This is version 52 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.