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B5MEF5

- B5MEF5_HUMAN

UniProt

B5MEF5 - B5MEF5_HUMAN

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Protein
Submitted name:

Sushi, nidogen and EGF-like domain-containing protein 1

Gene

SNED1

Organism
Homo sapiens (Human)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. calcium ion binding Source: InterPro

GO - Biological processi

  1. cell-matrix adhesion Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Sushi, nidogen and EGF-like domain-containing protein 1Imported
Gene namesi
Name:SNED1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 2

Organism-specific databases

HGNCiHGNC:24696. SNED1.

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotation

Proteomic databases

PRIDEiB5MEF5.

Expressioni

Gene expression databases

BgeeiB5MEF5.

Structurei

3D structure databases

ProteinModelPortaliB5MEF5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

EGF-like domainUniRule annotationSAAS annotation, RepeatSAAS annotation, SushiSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00760000118786.
HOGENOMiHOG000081748.
HOVERGENiHBG108495.

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
InterProiIPR000742. EG-like_dom.
IPR001881. EGF-like_Ca-bd_dom.
IPR013032. EGF-like_CS.
IPR000152. EGF-type_Asp/Asn_hydroxyl_site.
IPR018097. EGF_Ca-bd_CS.
IPR003961. Fibronectin_type3.
IPR003645. Fol_N.
IPR009030. Growth_fac_rcpt_N_dom.
IPR013783. Ig-like_fold.
IPR003886. Nidogen_extracell_dom.
IPR000436. Sushi_SCR_CCP.
[Graphical view]
PfamiPF00008. EGF. 11 hits.
PF00041. fn3. 3 hits.
PF12661. hEGF. 2 hits.
PF06119. NIDO. 1 hit.
[Graphical view]
SMARTiSM00032. CCP. 1 hit.
SM00181. EGF. 10 hits.
SM00179. EGF_CA. 5 hits.
SM00060. FN3. 3 hits.
SM00274. FOLN. 2 hits.
SM00539. NIDO. 1 hit.
[Graphical view]
SUPFAMiSSF49265. SSF49265. 2 hits.
SSF57184. SSF57184. 1 hit.
SSF57535. SSF57535. 1 hit.
PROSITEiPS00010. ASX_HYDROXYL. 5 hits.
PS00022. EGF_1. 15 hits.
PS01186. EGF_2. 13 hits.
PS50026. EGF_3. 15 hits.
PS01187. EGF_CA. 3 hits.
PS50853. FN3. 3 hits.
PS51220. NIDO. 1 hit.
PS50923. SUSHI. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B5MEF5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MHGILGACGR LRLEPATPLT PLLCAERDEC RAHPCRNGGS CRNLPGAYVC
60 70 80 90 100
RCPAGFVGVH CETEVDACDS SPCQHGGRCE SGGGAYLCVC PESFFGYHCE
110 120 130 140 150
TVSDPCFSSP CGGRGYCLAS NGSHSCTCKV GYTGEDCAKE LFPPTALKME
160 170 180 190 200
RVEESGVSIS WNPPNGPAAR QMLDGYAVTY VSSDGSYRRT DFVDRTRSSH
210 220 230 240 250
QLQALAAGRA YNISVFSVKR NSNNKNDISR PAVLLARTRP RPVEGFEVTN
260 270 280 290 300
VTASTISVQW ALHRIRHATV SGVRVSIRHP EALRDQATDV DRSVDRFTFR
310 320 330 340 350
ALLPGKRYTI QLTTLSGLRG EEHPTESLAT APTHVWTRPL PPANLTAARV
360 370 380 390 400
TATSAHVVWD APTPGSLLEA YVINVTTSQS TKSRYVPNGK LASYTVRDLL
410 420 430 440 450
PGRRYQLSVI AVQSTELGPQ HSEPAHLYII TSPRDGADRR WHQGGHHPRV
460 470 480 490 500
LKNRPPPARL PELRLLNDHS APETPTQPPR FSELVDGRGR VSARFGGSPS
510 520 530 540 550
KAATVRSHVP GNCSENPCQN GGTCVPGADA HSCDCGPGFK GRRCELACIK
560 570 580 590
VSRPCTRLFS ETKAFPVWEG GVCHHVYKRV YRVHQDICFK ESCESTSLK
Length:599
Mass (Da):65,224
Last modified:October 29, 2014 - v3
Checksum:iEED0CE8128FFE0BE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005237 Genomic DNA. No translation available.
AC093585 Genomic DNA. No translation available.
AC104809 Genomic DNA. No translation available.
KF510803 Genomic DNA. No translation available.
KF510805 Genomic DNA. No translation available.
RefSeqiXP_006712469.1. XM_006712406.1.
UniGeneiHs.471834.

Genome annotation databases

EnsembliENST00000342631; ENSP00000342992; ENSG00000162804.
GeneIDi25992.
KEGGihsa:25992.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005237 Genomic DNA. No translation available.
AC093585 Genomic DNA. No translation available.
AC104809 Genomic DNA. No translation available.
KF510803 Genomic DNA. No translation available.
KF510805 Genomic DNA. No translation available.
RefSeqi XP_006712469.1. XM_006712406.1.
UniGenei Hs.471834.

3D structure databases

ProteinModelPortali B5MEF5.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi B5MEF5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000342631 ; ENSP00000342992 ; ENSG00000162804 .
GeneIDi 25992.
KEGGi hsa:25992.

Organism-specific databases

CTDi 25992.
HGNCi HGNC:24696. SNED1.
GenAtlasi Search...

Phylogenomic databases

GeneTreei ENSGT00760000118786.
HOGENOMi HOG000081748.
HOVERGENi HBG108495.

Miscellaneous databases

ChiTaRSi SNED1. human.
GenomeRNAii 25992.
NextBioi 35478263.

Gene expression databases

Bgeei B5MEF5.

Family and domain databases

Gene3Di 2.60.40.10. 3 hits.
InterProi IPR000742. EG-like_dom.
IPR001881. EGF-like_Ca-bd_dom.
IPR013032. EGF-like_CS.
IPR000152. EGF-type_Asp/Asn_hydroxyl_site.
IPR018097. EGF_Ca-bd_CS.
IPR003961. Fibronectin_type3.
IPR003645. Fol_N.
IPR009030. Growth_fac_rcpt_N_dom.
IPR013783. Ig-like_fold.
IPR003886. Nidogen_extracell_dom.
IPR000436. Sushi_SCR_CCP.
[Graphical view ]
Pfami PF00008. EGF. 11 hits.
PF00041. fn3. 3 hits.
PF12661. hEGF. 2 hits.
PF06119. NIDO. 1 hit.
[Graphical view ]
SMARTi SM00032. CCP. 1 hit.
SM00181. EGF. 10 hits.
SM00179. EGF_CA. 5 hits.
SM00060. FN3. 3 hits.
SM00274. FOLN. 2 hits.
SM00539. NIDO. 1 hit.
[Graphical view ]
SUPFAMi SSF49265. SSF49265. 2 hits.
SSF57184. SSF57184. 1 hit.
SSF57535. SSF57535. 1 hit.
PROSITEi PS00010. ASX_HYDROXYL. 5 hits.
PS00022. EGF_1. 15 hits.
PS01186. EGF_2. 13 hits.
PS50026. EGF_3. 15 hits.
PS01187. EGF_CA. 3 hits.
PS50853. FN3. 3 hits.
PS51220. NIDO. 1 hit.
PS50923. SUSHI. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Generation and annotation of the DNA sequences of human chromosomes 2 and 4."
    Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H.
    , Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., Wilson R.K.
    Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiB5MEF5_HUMAN
AccessioniPrimary (citable) accession number: B5MEF5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 29, 2014
Last modified: November 26, 2014
This is version 56 of the entry and version 3 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3