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B5FJQ6 (B5FJQ6_SALDC) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribulose-phosphate 3-epimerase PIRNR PIRNR001461
EC=5.1.3.1 PIRNR PIRNR001461
Gene names
Name:rpe EMBL ACH76882.1
Ordered Locus Names:SeD_A3851 EMBL ACH76882.1
OrganismSalmonella dublin (strain CT_02021853) [Complete proteome] [HAMAP] EMBL ACH76882.1
Taxonomic identifier439851 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Salmonella ›

Protein attributes

Sequence length225 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-ribulose 5-phosphate = D-xylulose 5-phosphate. PIRNR PIRNR001461

Cofactor

Binds 1 divalent metal cation per subunit. Active with Co2+, Mn2+ and Zn2+ By similarity. PIRSR PIRSR001461-2

Sequence similarities

Belongs to the ribulose-phosphate 3-epimerase family. PIRNR PIRNR001461

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region144 – 1474Substrate binding By similarity PIRSR PIRSR001461-3
Region199 – 2002Substrate binding By similarity PIRSR PIRSR001461-3

Sites

Active site361Proton acceptor By similarity PIRSR PIRSR001461-1
Active site1771Proton donor By similarity PIRSR PIRSR001461-1
Metal binding341Divalent metal cation By similarity PIRSR PIRSR001461-2
Metal binding361Divalent metal cation By similarity PIRSR PIRSR001461-2
Metal binding681Divalent metal cation By similarity PIRSR PIRSR001461-2
Metal binding1771Divalent metal cation By similarity PIRSR PIRSR001461-2
Binding site91Substrate By similarity PIRSR PIRSR001461-3
Binding site681Substrate By similarity PIRSR PIRSR001461-3
Binding site1791Substrate; via amide nitrogen By similarity PIRSR PIRSR001461-3

Sequences

Sequence LengthMass (Da)Tools
B5FJQ6 [UniParc].

Last modified October 14, 2008. Version 1.
Checksum: 730183FCE8D167F3

FASTA22524,491
        10         20         30         40         50         60 
MKQYLIAPSI LSADFARLGE DTAKALAAGA DVVHFDVMDN HYVPNLTIGP MVLKSLRQYG 

        70         80         90        100        110        120 
ITAPIDVHLM VKPVDRIVPD FAAAGASIIT FHPEASEHVD RTLQLIKEHG CKAGLVFNPA 

       130        140        150        160        170        180 
TPLSYLDYVM DKLDVILLMS VNPGFGGQSF IPQTLDKLRE VRRRIDASGY DIRLEVDGGV 

       190        200        210        220 
KVNNIGEIAA AGADMFVAGS AIFDKPDYKK VIDEMRSELA KVTHG

« Hide

References

[1]"Complete genome of Salmonella dublin strain CT_02021853."
Ravel J., Fricke W.F., White D., McDermott P., Mammel M., Rosovitz M., Leclerc J., Cebula T., Sebastian Y.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CT_02021853.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001144 Genomic DNA. Translation: ACH76882.1.
RefSeqYP_002217444.1. NC_011205.1.

3D structure databases

ProteinModelPortalB5FJQ6.
ModBaseSearch...

Protein-protein interaction databases

STRING439851.SeD_A3851.
B5FJQ6.

Proteomic databases

PRIDEB5FJQ6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACH76882; ACH76882; SeD_A3851.
GeneID6873934.
KEGGsed:SeD_A3851.
PATRIC18495769. VBISalEnt111443_3789.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0036.
HOGENOMHOG000259347.
KOK01783.
OMAIDESGRD.
ProtClustDBPRK05581.

Enzyme and pathway databases

BioCycSENT439851:GH2Z-3510-MONOMER.

Family and domain databases

Gene3D3.20.20.70. 1 hit.
InterProIPR013785. Aldolase_TIM.
IPR026019. Ribul_P_3_epim.
IPR000056. Ribul_P_3_epim-like.
IPR011060. RibuloseP-bd_barrel.
[Graphical view]
PANTHERPTHR11749. PTHR11749. 1 hit.
PfamPF00834. Ribul_P_3_epim. 1 hit.
[Graphical view]
PIRSFPIRSF001461. RPE. 1 hit.
SUPFAMSSF51366. RibP_bind_barrel. 1 hit.
TIGRFAMsTIGR01163. rpe. 1 hit.
PROSITEPS01085. RIBUL_P_3_EPIMER_1. 1 hit.
PS01086. RIBUL_P_3_EPIMER_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB5FJQ6_SALDC
AccessionPrimary (citable) accession number: B5FJQ6
Entry history
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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