B5FF80 (UBIB_VIBFM) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Probable ubiquinone biosynthesis protein UbiB

Gene names

Name:	ubiB
Ordered Locus Names:	VFMJ11_0047

Organism

Vibrio fischeri (strain MJ11) [Complete proteome] [HAMAP]

Taxonomic identifier

388396 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio › Vibrio fischeri

Protein attributes

Sequence length	544 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis By similarity. HAMAP-Rule MF_00414
Subcellular location	Cell inner membrane; Single-pass membrane protein By similarity HAMAP-Rule MF_00414.
Sequence similarities	Belongs to the ABC1 family. UbiB subfamily.

Ontologies

Keywords
Biological process	Ubiquinone biosynthesis
Cellular component	Cell inner membrane Cell membrane Membrane
Domain	Transmembrane Transmembrane helix
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	ubiquinone biosynthetic process Inferred from electronic annotation. Source: HAMAP
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	transferase activity, transferring phosphorus-containing groups Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 544	544	Probable ubiquinone biosynthesis protein UbiB HAMAP-Rule MF_00414		PRO_1000123930
Regions
	Transmembrane	515 – 537	23	Helical; Potential

Sequences

	Sequence		Length	Mass (Da)
	B5FF80 [UniParc]. Last modified October 14, 2008. Version 1. Checksum: 2FDDF960646CBF47	FASTA	544	62,415
	10 20 30 40 50 60 MTPSELKRLY HITKVQLEYG LDELLPEHAL TQLPKRLRKG LFWIKNKYPE KPLGERLRLA 70 80 90 100 110 120 LQELGPVWIK FGQMMSTRRD LFPPHLADQL ALLQDQVAPF DGQLAKDQME MELGGPLDNW 130 140 150 160 170 180 FTDFDIKPLA SASIAQVHTA KLKDSGREIV LKVIRPDIRP VIESDIRLMY RMARLVEQHI 190 200 210 220 230 240 PEARRLKPVE VIEEYEKTLL DELDLRREAS NAMQLRRNFE GSEELYVPEV ILDLSSEHLM 250 260 270 280 290 300 VSERIYGIQV SDIEQLEKNG TNMKLLAERG VSVFFTQVFR DSFFHADMHP GNVFVNPDNP 310 320 330 340 350 360 ENPQWIGLDC GIVGTLNKED KRYLAENLLG FFNSDYHKVA QLHVDSGWVP ADTNVEEFEF 370 380 390 400 410 420 AIRMVCEPIF AKPLGEISFG HVLLNLFNTA RRFNMEVQPQ LVLLQKTLLY VEGLGRQLYP 430 440 450 460 470 480 QLDLWATAKP FLETWMAKQV GPAAFVTALS EKAPFWAEKL PELPDLVYDS LRQGKVLNQR 490 500 510 520 530 540 MDKLYAGYRQ SKRQQAKGQF LFNVGATLLI CSAVLLTSNI TVLASISAAT GAAFWLFSWR AYRR

References

[1]

"Complete sequence of Vibrio fischeri strain MJ11." Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C. Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MJ11.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001139 Genomic DNA. Translation: ACH65144.1.
RefSeq	YP_002154818.1. NC_011184.1.
3D structure databases
ProteinModelPortal	B5FF80.
ModBase	Search...
Protein-protein interaction databases
STRING	388396.VFMJ11_0047.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACH65144; ACH65144; VFMJ11_0047.
GeneID	6807696.
KEGG	vfm:VFMJ11_0047.
PATRIC	20118547. VBIVibFis37164_0047.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0661.
HOGENOM	HOG000264440.
KO	K03688.
OMA	IQVSDIE.
ProtClustDB	PRK04750.
Family and domain databases
HAMAP	MF_00414. UbiB.
InterPro	IPR011009. Kinase-like_dom. IPR010232. UbiB. IPR004147. UbiB_dom. [Graphical view]
Pfam	PF03109. ABC1. 1 hit. [Graphical view]
SUPFAM	SSF56112. Kinase_like. 1 hit.
TIGRFAMs	TIGR01982. UbiB. 1 hit.
ProtoNet	Search...

Entry information

Entry name

UBIB_VIBFM

Accession

Primary (citable) accession number: B5FF80

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	October 14, 2008
Last modified:	May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program