Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Pseudouridine synthase

Gene

VFMJ11_1671

Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomeraseUniRule annotationSAAS annotationImported, RNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciVFIS388396:G13HN-1671-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
Gene namesi
Ordered Locus Names:VFMJ11_1671Imported
OrganismiVibrio fischeri (strain MJ11)Imported
Taxonomic identifieri388396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
Proteomesi
  • UP000001857 Componenti: Chromosome I

Structurei

3D structure databases

ProteinModelPortaliB5FEZ5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 70S4 RNA-bindingInterPro annotationAdd BLAST62

Sequence similaritiesi

Belongs to the pseudouridine synthase RsuA family.UniRule annotationSAAS annotation

Phylogenomic databases

HOGENOMiHOG000044954.
KOiK06182.
OMAiNAHDKEY.
OrthoDBiPOG091H02IO.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiView protein in InterPro
IPR020103. PsdUridine_synth_cat_dom.
IPR000748. PsdUridine_synth_RsuA/RluB/E/F.
IPR018496. PsdUridine_synth_RsuA/RluB_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
PANTHERiPTHR21600. PTHR21600. 1 hit.
PfamiView protein in Pfam
PF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
SMARTiView protein in SMART
SM00363. S4. 1 hit.
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00093. TIGR00093. 1 hit.
PROSITEiView protein in PROSITE
PS01149. PSI_RSU. 1 hit.
PS50889. S4. 1 hit.

Sequencei

Sequence statusi: Complete.

B5FEZ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSPEPKLTR LNKFISDTGY CSRREADKLI DQQRITINGK IPEMGTKVAD
60 70 80 90 100
GDEVLVDGKP LKEKQDRIYI AFNKPVGITC TTERHVEGNI VDYINHEQRI
110 120 130 140 150
FPIGRLDKPS DGLIFLTNDG DIVNKILRAG NAHEKEYVVR VDKPITDEFL
160 170 180 190 200
QKMAAGVPIL DTVTLPCKIK QESRFVFRIT LTQGLNRQIR RMCEYLDYEV
210 220 230 240 250
FKLKRVRIMN IDLGKLASGE WRYLSQAEMD QLNGMIGTSS KTEEASRKVK
260 270 280 290 300
EIDGKVRVLK KASSGRNHHS NNTFKENRRE KAKEGRFSKS APKRKNDRKE
310
QGKPQSEIKV WRPK
Length:314
Mass (Da):36,073
Last modified:October 14, 2008 - v1
Checksum:iEBAF57B8A13373C2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001139 Genomic DNA. Translation: ACH65792.1.
RefSeqiWP_005419811.1. NC_011184.1.

Genome annotation databases

EnsemblBacteriaiACH65792; ACH65792; VFMJ11_1671.
KEGGivfm:VFMJ11_1671.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiB5FEZ5_VIBFM
AccessioniPrimary (citable) accession number: B5FEZ5
Entry historyiIntegrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: June 7, 2017
This is version 70 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported