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Protein

Pseudouridine synthase

Gene

VFMJ11_1671

Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotation

Keywords - Ligandi

RNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
Gene namesi
Ordered Locus Names:VFMJ11_1671Imported
OrganismiVibrio fischeri (strain MJ11)Imported
Taxonomic identifieri388396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001857 Componenti: Chromosome I

Structurei

3D structure databases

ProteinModelPortaliB5FEZ5.
SMRiB5FEZ5. Positions 66-240.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the pseudouridine synthase rsuA family.UniRule annotation
Contains S4 RNA-binding domain.SAAS annotation

Phylogenomic databases

eggNOGiCOG1187.
HOGENOMiHOG000044954.
KOiK06182.
OMAiHKERIFP.
OrthoDBiEOG6130DV.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR000748. PsdUridine_synth_RsuA/RluB/E/F.
IPR018496. PsdUridine_synth_RsuA/RluB_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00093. TIGR00093. 1 hit.
PROSITEiPS01149. PSI_RSU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B5FEZ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSPEPKLTR LNKFISDTGY CSRREADKLI DQQRITINGK IPEMGTKVAD
60 70 80 90 100
GDEVLVDGKP LKEKQDRIYI AFNKPVGITC TTERHVEGNI VDYINHEQRI
110 120 130 140 150
FPIGRLDKPS DGLIFLTNDG DIVNKILRAG NAHEKEYVVR VDKPITDEFL
160 170 180 190 200
QKMAAGVPIL DTVTLPCKIK QESRFVFRIT LTQGLNRQIR RMCEYLDYEV
210 220 230 240 250
FKLKRVRIMN IDLGKLASGE WRYLSQAEMD QLNGMIGTSS KTEEASRKVK
260 270 280 290 300
EIDGKVRVLK KASSGRNHHS NNTFKENRRE KAKEGRFSKS APKRKNDRKE
310
QGKPQSEIKV WRPK
Length:314
Mass (Da):36,073
Last modified:October 14, 2008 - v1
Checksum:iEBAF57B8A13373C2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001139 Genomic DNA. Translation: ACH65792.1.
RefSeqiWP_005419811.1. NC_011184.1.

Genome annotation databases

EnsemblBacteriaiACH65792; ACH65792; VFMJ11_1671.
KEGGivfm:VFMJ11_1671.
PATRICi20121796. VBIVibFis37164_1607.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001139 Genomic DNA. Translation: ACH65792.1.
RefSeqiWP_005419811.1. NC_011184.1.

3D structure databases

ProteinModelPortaliB5FEZ5.
SMRiB5FEZ5. Positions 66-240.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACH65792; ACH65792; VFMJ11_1671.
KEGGivfm:VFMJ11_1671.
PATRICi20121796. VBIVibFis37164_1607.

Phylogenomic databases

eggNOGiCOG1187.
HOGENOMiHOG000044954.
KOiK06182.
OMAiHKERIFP.
OrthoDBiEOG6130DV.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR000748. PsdUridine_synth_RsuA/RluB/E/F.
IPR018496. PsdUridine_synth_RsuA/RluB_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00093. TIGR00093. 1 hit.
PROSITEiPS01149. PSI_RSU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Vibrio fischeri strain MJ11."
    Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
    Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MJ11Imported.

Entry informationi

Entry nameiB5FEZ5_VIBFM
AccessioniPrimary (citable) accession number: B5FEZ5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: July 22, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.