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B5FEZ5

- B5FEZ5_VIBFM

UniProt

B5FEZ5 - B5FEZ5_VIBFM

Protein

Pseudouridine synthase

Gene

VFMJ11_1671

Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 48 (01 Oct 2014)
      Sequence version 1 (14 Oct 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. pseudouridine synthase activity Source: InterPro
    2. RNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. pseudouridine synthesis Source: InterPro

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Ligandi

    RNA-bindingSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
    Gene namesi
    Ordered Locus Names:VFMJ11_1671Imported
    OrganismiVibrio fischeri (strain MJ11)Imported
    Taxonomic identifieri388396 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
    ProteomesiUP000001857: Chromosome I

    Interactioni

    Protein-protein interaction databases

    STRINGi388396.VFMJ11_1671.

    Structurei

    3D structure databases

    ProteinModelPortaliB5FEZ5.
    SMRiB5FEZ5. Positions 66-240.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the pseudouridine synthase rsuA family.UniRule annotation
    Contains S4 RNA-binding domain.SAAS annotation

    Phylogenomic databases

    eggNOGiCOG1187.
    HOGENOMiHOG000044954.
    KOiK06182.
    OMAiNAHDKEY.
    OrthoDBiEOG6130DV.

    Family and domain databases

    Gene3Di3.10.290.10. 1 hit.
    InterProiIPR020103. PsdUridine_synth_cat_dom.
    IPR000748. PsdUridine_synth_RsuA/RluB/E/F.
    IPR018496. PsdUridine_synth_RsuA/RluB_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    IPR002942. S4_RNA-bd.
    [Graphical view]
    PfamiPF00849. PseudoU_synth_2. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view]
    SMARTiSM00363. S4. 1 hit.
    [Graphical view]
    SUPFAMiSSF55120. SSF55120. 1 hit.
    TIGRFAMsiTIGR00093. TIGR00093. 1 hit.
    PROSITEiPS01149. PSI_RSU. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B5FEZ5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTSPEPKLTR LNKFISDTGY CSRREADKLI DQQRITINGK IPEMGTKVAD    50
    GDEVLVDGKP LKEKQDRIYI AFNKPVGITC TTERHVEGNI VDYINHEQRI 100
    FPIGRLDKPS DGLIFLTNDG DIVNKILRAG NAHEKEYVVR VDKPITDEFL 150
    QKMAAGVPIL DTVTLPCKIK QESRFVFRIT LTQGLNRQIR RMCEYLDYEV 200
    FKLKRVRIMN IDLGKLASGE WRYLSQAEMD QLNGMIGTSS KTEEASRKVK 250
    EIDGKVRVLK KASSGRNHHS NNTFKENRRE KAKEGRFSKS APKRKNDRKE 300
    QGKPQSEIKV WRPK 314
    Length:314
    Mass (Da):36,073
    Last modified:October 14, 2008 - v1
    Checksum:iEBAF57B8A13373C2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001139 Genomic DNA. Translation: ACH65792.1.
    RefSeqiYP_002156383.1. NC_011184.1.

    Genome annotation databases

    EnsemblBacteriaiACH65792; ACH65792; VFMJ11_1671.
    GeneIDi6807522.
    KEGGivfm:VFMJ11_1671.
    PATRICi20121796. VBIVibFis37164_1607.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001139 Genomic DNA. Translation: ACH65792.1 .
    RefSeqi YP_002156383.1. NC_011184.1.

    3D structure databases

    ProteinModelPortali B5FEZ5.
    SMRi B5FEZ5. Positions 66-240.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 388396.VFMJ11_1671.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACH65792 ; ACH65792 ; VFMJ11_1671 .
    GeneIDi 6807522.
    KEGGi vfm:VFMJ11_1671.
    PATRICi 20121796. VBIVibFis37164_1607.

    Phylogenomic databases

    eggNOGi COG1187.
    HOGENOMi HOG000044954.
    KOi K06182.
    OMAi NAHDKEY.
    OrthoDBi EOG6130DV.

    Family and domain databases

    Gene3Di 3.10.290.10. 1 hit.
    InterProi IPR020103. PsdUridine_synth_cat_dom.
    IPR000748. PsdUridine_synth_RsuA/RluB/E/F.
    IPR018496. PsdUridine_synth_RsuA/RluB_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    IPR002942. S4_RNA-bd.
    [Graphical view ]
    Pfami PF00849. PseudoU_synth_2. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view ]
    SMARTi SM00363. S4. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55120. SSF55120. 1 hit.
    TIGRFAMsi TIGR00093. TIGR00093. 1 hit.
    PROSITEi PS01149. PSI_RSU. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Vibrio fischeri strain MJ11."
      Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
      Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MJ11Imported.

    Entry informationi

    Entry nameiB5FEZ5_VIBFM
    AccessioniPrimary (citable) accession number: B5FEZ5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 14, 2008
    Last sequence update: October 14, 2008
    Last modified: October 1, 2014
    This is version 48 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3