B5FEZ5 (B5FEZ5_VIBFM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003887
EC=5.4.99.- RuleBase RU003887

Gene names

Ordered Locus Names:

VFMJ11_1671 EMBL ACH65792.1

Organism

Vibrio fischeri (strain MJ11) [Complete proteome] [HAMAP] EMBL ACH65792.1

Taxonomic identifier

388396 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio › Vibrio fischeri

Protein attributes

Sequence length	314 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rsuA family. RuleBase RU003887 Contains 1 S4 RNA-binding domain. SAAS SAAS000748

Ontologies

Keywords
Ligand	RNA-binding SAAS SAAS000748
Molecular function	Isomerase RuleBase RU003887 SAAS SAAS000748 EMBL ACH65792.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B5FEZ5 [UniParc]. Last modified October 14, 2008. Version 1. Checksum: EBAF57B8A13373C2	FASTA	314	36,073
	10 20 30 40 50 60 MTSPEPKLTR LNKFISDTGY CSRREADKLI DQQRITINGK IPEMGTKVAD GDEVLVDGKP 70 80 90 100 110 120 LKEKQDRIYI AFNKPVGITC TTERHVEGNI VDYINHEQRI FPIGRLDKPS DGLIFLTNDG 130 140 150 160 170 180 DIVNKILRAG NAHEKEYVVR VDKPITDEFL QKMAAGVPIL DTVTLPCKIK QESRFVFRIT 190 200 210 220 230 240 LTQGLNRQIR RMCEYLDYEV FKLKRVRIMN IDLGKLASGE WRYLSQAEMD QLNGMIGTSS 250 260 270 280 290 300 KTEEASRKVK EIDGKVRVLK KASSGRNHHS NNTFKENRRE KAKEGRFSKS APKRKNDRKE 310 QGKPQSEIKV WRPK

References

[1]

"Complete sequence of Vibrio fischeri strain MJ11." Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C. Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MJ11.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001139 Genomic DNA. Translation: ACH65792.1.
RefSeq	YP_002156383.1. NC_011184.1.
3D structure databases
ProteinModelPortal	B5FEZ5.
SMR	B5FEZ5. Positions 66-240.
ModBase	Search...
Protein-protein interaction databases
STRING	388396.VFMJ11_1671.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACH65792; ACH65792; VFMJ11_1671.
GeneID	6807522.
KEGG	vfm:VFMJ11_1671.
PATRIC	20121796. VBIVibFis37164_1607.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1187.
HOGENOM	HOG000044954.
KO	K06182.
OMA	MNVSLKG.
ProtClustDB	CLSK2396163.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR000748. PsdUridine_synth_RsuA/RluB/E/F. IPR018496. PsdUridine_synth_RsuA/RluB_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00093. TIGR00093. 1 hit.
PROSITE	PS01149. PSI_RSU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B5FEZ5_VIBFM

Accession

Primary (citable) accession number: B5FEZ5

Entry history

Integrated into UniProtKB/TrEMBL:	October 14, 2008
Last sequence update:	October 14, 2008
Last modified:	May 1, 2013
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)