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B5FEZ5

- B5FEZ5_VIBFM

UniProt

B5FEZ5 - B5FEZ5_VIBFM

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Protein

Pseudouridine synthase

Gene

VFMJ11_1671

Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. pseudouridine synthase activity Source: InterPro
  2. RNA binding Source: UniProtKB-KW

GO - Biological processi

  1. pseudouridine synthesis Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotation

Keywords - Ligandi

RNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
Gene namesi
Ordered Locus Names:VFMJ11_1671Imported
OrganismiVibrio fischeri (strain MJ11)Imported
Taxonomic identifieri388396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001857: Chromosome I

Interactioni

Protein-protein interaction databases

STRINGi388396.VFMJ11_1671.

Structurei

3D structure databases

ProteinModelPortaliB5FEZ5.
SMRiB5FEZ5. Positions 66-240.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the pseudouridine synthase rsuA family.UniRule annotation
Contains S4 RNA-binding domain.SAAS annotation

Phylogenomic databases

eggNOGiCOG1187.
HOGENOMiHOG000044954.
KOiK06182.
OMAiNAHDKEY.
OrthoDBiEOG6130DV.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR000748. PsdUridine_synth_RsuA/RluB/E/F.
IPR018496. PsdUridine_synth_RsuA/RluB_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00093. TIGR00093. 1 hit.
PROSITEiPS01149. PSI_RSU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B5FEZ5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTSPEPKLTR LNKFISDTGY CSRREADKLI DQQRITINGK IPEMGTKVAD
60 70 80 90 100
GDEVLVDGKP LKEKQDRIYI AFNKPVGITC TTERHVEGNI VDYINHEQRI
110 120 130 140 150
FPIGRLDKPS DGLIFLTNDG DIVNKILRAG NAHEKEYVVR VDKPITDEFL
160 170 180 190 200
QKMAAGVPIL DTVTLPCKIK QESRFVFRIT LTQGLNRQIR RMCEYLDYEV
210 220 230 240 250
FKLKRVRIMN IDLGKLASGE WRYLSQAEMD QLNGMIGTSS KTEEASRKVK
260 270 280 290 300
EIDGKVRVLK KASSGRNHHS NNTFKENRRE KAKEGRFSKS APKRKNDRKE
310
QGKPQSEIKV WRPK
Length:314
Mass (Da):36,073
Last modified:October 14, 2008 - v1
Checksum:iEBAF57B8A13373C2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001139 Genomic DNA. Translation: ACH65792.1.
RefSeqiYP_002156383.1. NC_011184.1.

Genome annotation databases

EnsemblBacteriaiACH65792; ACH65792; VFMJ11_1671.
GeneIDi6807522.
KEGGivfm:VFMJ11_1671.
PATRICi20121796. VBIVibFis37164_1607.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001139 Genomic DNA. Translation: ACH65792.1 .
RefSeqi YP_002156383.1. NC_011184.1.

3D structure databases

ProteinModelPortali B5FEZ5.
SMRi B5FEZ5. Positions 66-240.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 388396.VFMJ11_1671.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACH65792 ; ACH65792 ; VFMJ11_1671 .
GeneIDi 6807522.
KEGGi vfm:VFMJ11_1671.
PATRICi 20121796. VBIVibFis37164_1607.

Phylogenomic databases

eggNOGi COG1187.
HOGENOMi HOG000044954.
KOi K06182.
OMAi NAHDKEY.
OrthoDBi EOG6130DV.

Family and domain databases

Gene3Di 3.10.290.10. 1 hit.
InterProi IPR020103. PsdUridine_synth_cat_dom.
IPR000748. PsdUridine_synth_RsuA/RluB/E/F.
IPR018496. PsdUridine_synth_RsuA/RluB_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view ]
Pfami PF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view ]
SMARTi SM00363. S4. 1 hit.
[Graphical view ]
SUPFAMi SSF55120. SSF55120. 1 hit.
TIGRFAMsi TIGR00093. TIGR00093. 1 hit.
PROSITEi PS01149. PSI_RSU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Vibrio fischeri strain MJ11."
    Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
    Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MJ11Imported.

Entry informationi

Entry nameiB5FEZ5_VIBFM
AccessioniPrimary (citable) accession number: B5FEZ5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: October 29, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3