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B5FEZ5 (B5FEZ5_VIBFM) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Pseudouridine synthase RuleBase RU003887

EC=5.4.99.- RuleBase RU003887
Gene names
Ordered Locus Names:VFMJ11_1671 EMBL ACH65792.1
OrganismVibrio fischeri (strain MJ11) [Complete proteome] [HAMAP] EMBL ACH65792.1
Taxonomic identifier388396 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length314 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rsuA family. RuleBase RU003887

Contains S4 RNA-binding domain. SAAS SAAS018496

Contains SRNA-binding domain. SAAS SAAS018496

Ontologies

Sequences

Sequence LengthMass (Da)Tools
B5FEZ5 [UniParc].

Last modified October 14, 2008. Version 1.
Checksum: EBAF57B8A13373C2

FASTA31436,073
        10         20         30         40         50         60 
MTSPEPKLTR LNKFISDTGY CSRREADKLI DQQRITINGK IPEMGTKVAD GDEVLVDGKP 

        70         80         90        100        110        120 
LKEKQDRIYI AFNKPVGITC TTERHVEGNI VDYINHEQRI FPIGRLDKPS DGLIFLTNDG 

       130        140        150        160        170        180 
DIVNKILRAG NAHEKEYVVR VDKPITDEFL QKMAAGVPIL DTVTLPCKIK QESRFVFRIT 

       190        200        210        220        230        240 
LTQGLNRQIR RMCEYLDYEV FKLKRVRIMN IDLGKLASGE WRYLSQAEMD QLNGMIGTSS 

       250        260        270        280        290        300 
KTEEASRKVK EIDGKVRVLK KASSGRNHHS NNTFKENRRE KAKEGRFSKS APKRKNDRKE 

       310 
QGKPQSEIKV WRPK 

« Hide

References

[1]"Complete sequence of Vibrio fischeri strain MJ11."
Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MJ11.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001139 Genomic DNA. Translation: ACH65792.1.
RefSeqYP_002156383.1. NC_011184.1.

3D structure databases

ProteinModelPortalB5FEZ5.
SMRB5FEZ5. Positions 66-240.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING388396.VFMJ11_1671.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACH65792; ACH65792; VFMJ11_1671.
GeneID6807522.
KEGGvfm:VFMJ11_1671.
PATRIC20121796. VBIVibFis37164_1607.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1187.
HOGENOMHOG000044954.
KOK06182.
OMANAHDKEY.
OrthoDBEOG6130DV.

Family and domain databases

Gene3D3.10.290.10. 1 hit.
InterProIPR020103. PsdUridine_synth_cat_dom.
IPR000748. PsdUridine_synth_RsuA/RluB/E/F.
IPR018496. PsdUridine_synth_RsuA/RluB_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
TIGRFAMsTIGR00093. TIGR00093. 1 hit.
PROSITEPS01149. PSI_RSU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB5FEZ5_VIBFM
AccessionPrimary (citable) accession number: B5FEZ5
Entry history
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: May 14, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)