B5FEK0 (B5FEK0_VIBFM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase EMBL ACH65422.1

Gene names

Ordered Locus Names:

VFMJ11_1546 EMBL ACH65422.1

Organism

Vibrio fischeri (strain MJ11) [Complete proteome] [HAMAP] EMBL ACH65422.1

Taxonomic identifier

388396 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio › Vibrio fischeri

Protein attributes

Sequence length	285 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACH65422.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B5FEK0 [UniParc]. Last modified October 14, 2008. Version 1. Checksum: A5F2C3B3A473E0B5	FASTA	285	32,110
	10 20 30 40 50 60 MMKIKLLAAL VALGLTPLPT YSHDEPNTAS IDVVLATQYE KGMDIEGYWA SEKLDGIRAL 70 80 90 100 110 120 WTGEKLITRT GHTIYAPDWF TDPLPDHKID GELWAGRGGF QQVAKTVLDS QPDDELWKKI 130 140 150 160 170 180 RFMAFDLPSS AGMFPKRYYE LSTIVKKLDH PHLKLVEHYP ISNEDSLLEA LDDISARNGE 190 200 210 220 230 240 GVMLRKVSEV YRPGRSDDLI KVKKHQDNEA IVIGYTDGKG KFRGMVGAMI LRMPNGKEFK 250 260 270 280 VGSGLSVEVR ENPPKLGSTV TYRYNGYTDN GIPRFARYVA VRKNY

References

[1]

"Complete sequence of Vibrio fischeri strain MJ11." Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C. Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MJ11.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001139 Genomic DNA. Translation: ACH65422.1.
RefSeq	YP_002156265.1. NC_011184.1.
3D structure databases
ProteinModelPortal	B5FEK0.
ModBase	Search...
Protein-protein interaction databases
STRING	388396.VFMJ11_1546.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACH65422; ACH65422; VFMJ11_1546.
GeneID	6807538.
KEGG	vfm:VFMJ11_1546.
PATRIC	20121552. VBIVibFis37164_1491.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000293070.
KO	K01971.
OMA	VRGYWDG.
ProtClustDB	PRK09125.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B5FEK0_VIBFM

Accession

Primary (citable) accession number: B5FEK0

Entry history

Integrated into UniProtKB/TrEMBL:	October 14, 2008
Last sequence update:	October 14, 2008
Last modified:	May 1, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)