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B5FEK0

- B5FEK0_VIBFM

UniProt

B5FEK0 - B5FEK0_VIBFM

Protein
Submitted name:

DNA ligase

Gene

VFMJ11_1546

Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 35 (01 Oct 2014)
      Sequence version 1 (14 Oct 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported
    Gene namesi
    Ordered Locus Names:VFMJ11_1546Imported
    OrganismiVibrio fischeri (strain MJ11)Imported
    Taxonomic identifieri388396 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
    ProteomesiUP000001857: Chromosome I

    Interactioni

    Protein-protein interaction databases

    STRINGi388396.VFMJ11_1546.

    Structurei

    3D structure databases

    ProteinModelPortaliB5FEK0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000293070.
    KOiK01971.
    OMAiGKGQFEN.
    OrthoDBiEOG60919Q.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B5FEK0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MMKIKLLAAL VALGLTPLPT YSHDEPNTAS IDVVLATQYE KGMDIEGYWA    50
    SEKLDGIRAL WTGEKLITRT GHTIYAPDWF TDPLPDHKID GELWAGRGGF 100
    QQVAKTVLDS QPDDELWKKI RFMAFDLPSS AGMFPKRYYE LSTIVKKLDH 150
    PHLKLVEHYP ISNEDSLLEA LDDISARNGE GVMLRKVSEV YRPGRSDDLI 200
    KVKKHQDNEA IVIGYTDGKG KFRGMVGAMI LRMPNGKEFK VGSGLSVEVR 250
    ENPPKLGSTV TYRYNGYTDN GIPRFARYVA VRKNY 285
    Length:285
    Mass (Da):32,110
    Last modified:October 14, 2008 - v1
    Checksum:iA5F2C3B3A473E0B5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001139 Genomic DNA. Translation: ACH65422.1.
    RefSeqiYP_002156265.1. NC_011184.1.

    Genome annotation databases

    EnsemblBacteriaiACH65422; ACH65422; VFMJ11_1546.
    GeneIDi6807538.
    KEGGivfm:VFMJ11_1546.
    PATRICi20121552. VBIVibFis37164_1491.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001139 Genomic DNA. Translation: ACH65422.1 .
    RefSeqi YP_002156265.1. NC_011184.1.

    3D structure databases

    ProteinModelPortali B5FEK0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 388396.VFMJ11_1546.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACH65422 ; ACH65422 ; VFMJ11_1546 .
    GeneIDi 6807538.
    KEGGi vfm:VFMJ11_1546.
    PATRICi 20121552. VBIVibFis37164_1491.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000293070.
    KOi K01971.
    OMAi GKGQFEN.
    OrthoDBi EOG60919Q.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Vibrio fischeri strain MJ11."
      Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
      Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MJ11Imported.

    Entry informationi

    Entry nameiB5FEK0_VIBFM
    AccessioniPrimary (citable) accession number: B5FEK0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 14, 2008
    Last sequence update: October 14, 2008
    Last modified: October 1, 2014
    This is version 35 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3