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B5FEK0

- B5FEK0_VIBFM

UniProt

B5FEK0 - B5FEK0_VIBFM

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Protein
Submitted name:

DNA ligase

Gene
VFMJ11_1546
Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:VFMJ11_1546Imported
OrganismiVibrio fischeri (strain MJ11)Imported
Taxonomic identifieri388396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001857: Chromosome I

Interactioni

Protein-protein interaction databases

STRINGi388396.VFMJ11_1546.

Structurei

3D structure databases

ProteinModelPortaliB5FEK0.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiGKGQFEN.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B5FEK0-1 [UniParc]FASTAAdd to Basket

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MMKIKLLAAL VALGLTPLPT YSHDEPNTAS IDVVLATQYE KGMDIEGYWA    50
SEKLDGIRAL WTGEKLITRT GHTIYAPDWF TDPLPDHKID GELWAGRGGF 100
QQVAKTVLDS QPDDELWKKI RFMAFDLPSS AGMFPKRYYE LSTIVKKLDH 150
PHLKLVEHYP ISNEDSLLEA LDDISARNGE GVMLRKVSEV YRPGRSDDLI 200
KVKKHQDNEA IVIGYTDGKG KFRGMVGAMI LRMPNGKEFK VGSGLSVEVR 250
ENPPKLGSTV TYRYNGYTDN GIPRFARYVA VRKNY 285
Length:285
Mass (Da):32,110
Last modified:October 14, 2008 - v1
Checksum:iA5F2C3B3A473E0B5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001139 Genomic DNA. Translation: ACH65422.1.
RefSeqiYP_002156265.1. NC_011184.1.

Genome annotation databases

EnsemblBacteriaiACH65422; ACH65422; VFMJ11_1546.
GeneIDi6807538.
KEGGivfm:VFMJ11_1546.
PATRICi20121552. VBIVibFis37164_1491.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001139 Genomic DNA. Translation: ACH65422.1 .
RefSeqi YP_002156265.1. NC_011184.1.

3D structure databases

ProteinModelPortali B5FEK0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 388396.VFMJ11_1546.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACH65422 ; ACH65422 ; VFMJ11_1546 .
GeneIDi 6807538.
KEGGi vfm:VFMJ11_1546.
PATRICi 20121552. VBIVibFis37164_1491.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000293070.
KOi K01971.
OMAi GKGQFEN.
OrthoDBi EOG60919Q.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Vibrio fischeri strain MJ11."
    Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
    Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MJ11.

Entry informationi

Entry nameiB5FEK0_VIBFM
AccessioniPrimary (citable) accession number: B5FEK0
Entry historyi
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: June 11, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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