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B5FEK0 (B5FEK0_VIBFM) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:VFMJ11_1546 EMBL ACH65422.1
OrganismVibrio fischeri (strain MJ11) [Complete proteome] [HAMAP] EMBL ACH65422.1
Taxonomic identifier388396 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length285 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACH65422.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B5FEK0 [UniParc].

Last modified October 14, 2008. Version 1.
Checksum: A5F2C3B3A473E0B5

FASTA28532,110
        10         20         30         40         50         60 
MMKIKLLAAL VALGLTPLPT YSHDEPNTAS IDVVLATQYE KGMDIEGYWA SEKLDGIRAL 

        70         80         90        100        110        120 
WTGEKLITRT GHTIYAPDWF TDPLPDHKID GELWAGRGGF QQVAKTVLDS QPDDELWKKI 

       130        140        150        160        170        180 
RFMAFDLPSS AGMFPKRYYE LSTIVKKLDH PHLKLVEHYP ISNEDSLLEA LDDISARNGE 

       190        200        210        220        230        240 
GVMLRKVSEV YRPGRSDDLI KVKKHQDNEA IVIGYTDGKG KFRGMVGAMI LRMPNGKEFK 

       250        260        270        280 
VGSGLSVEVR ENPPKLGSTV TYRYNGYTDN GIPRFARYVA VRKNY 

« Hide

References

[1]"Complete sequence of Vibrio fischeri strain MJ11."
Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MJ11.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001139 Genomic DNA. Translation: ACH65422.1.
RefSeqYP_002156265.1. NC_011184.1.

3D structure databases

ProteinModelPortalB5FEK0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING388396.VFMJ11_1546.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACH65422; ACH65422; VFMJ11_1546.
GeneID6807538.
KEGGvfm:VFMJ11_1546.
PATRIC20121552. VBIVibFis37164_1491.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000293070.
KOK01971.
OMAVRGYWDG.
OrthoDBEOG60919Q.
ProtClustDBPRK09125.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB5FEK0_VIBFM
AccessionPrimary (citable) accession number: B5FEK0
Entry history
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: April 16, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)