Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Putrescine-binding periplasmic protein

Gene

VFMJ11_1394

Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Required for the activity of the bacterial periplasmic transport system of putrescine.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Putrescine-binding periplasmic proteinUniRule annotation
Gene namesi
Ordered Locus Names:VFMJ11_1394Imported
OrganismiVibrio fischeri (strain MJ11)Imported
Taxonomic identifieri388396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001857 Componenti: Chromosome I

Subcellular locationi

  • Periplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

PeriplasmUniRule annotation

Structurei

3D structure databases

ProteinModelPortaliB5FE48.
SMRiB5FE48. Positions 27-343.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the bacterial solute-binding protein PotD/PotF family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0687.
HOGENOMiHOG000263814.
KOiK11069.
OMAiMPDAPIG.
OrthoDBiEOG66XBH9.

Family and domain databases

InterProiIPR001188. Sperm_putr-bd.
[Graphical view]
PANTHERiPTHR30222:SF4. PTHR30222:SF4. 1 hit.
PIRSFiPIRSF019574. Periplasmic_polyamine_BP. 1 hit.
PRINTSiPR00909. SPERMDNBNDNG.

Sequencei

Sequence statusi: Complete.

B5FE48-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKMAAFFTG TACALALTMN VANAKENDEL VFMNWGPYIN SDILEEFTKE
60 70 80 90 100
TGIKVIYSTY ESNETLYAKM KAHNKGYDLV VPSTYFVAKM RDEKMLQPID
110 120 130 140 150
KSKLSNFTQL DTNYLDKPFD PKNEYSIPHV VAITGLAVNT EMYNPDDFNS
160 170 180 190 200
WGDLWNPEFE GQLMLMDDTR EVFHIALRKL GYSGNSTNPK EIDEAYAELQ
210 220 230 240 250
KLMPNVLVFN SDNPGAPYMA GEVGLGMLWN GSAAAAQAEG LPIKLIFPKE
260 270 280 290 300
GGIGWVDNFA IPSGANNVEA AHKMIDFLLR PEIAARISAD TGYLTAVKAS
310 320 330 340
NDKFKDVAPL FPSQEDLDRV EWQSAVGDMT VKYEEYFLKL KAGQ
Length:344
Mass (Da):38,406
Last modified:October 14, 2008 - v1
Checksum:i6EFD8992FDA5B48A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001139 Genomic DNA. Translation: ACH66432.1.
RefSeqiWP_005419251.1. NC_011184.1.
YP_002156113.1. NC_011184.1.

Genome annotation databases

EnsemblBacteriaiACH66432; ACH66432; VFMJ11_1394.
KEGGivfm:VFMJ11_1394.
PATRICi20121250. VBIVibFis37164_1340.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001139 Genomic DNA. Translation: ACH66432.1.
RefSeqiWP_005419251.1. NC_011184.1.
YP_002156113.1. NC_011184.1.

3D structure databases

ProteinModelPortaliB5FE48.
SMRiB5FE48. Positions 27-343.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACH66432; ACH66432; VFMJ11_1394.
KEGGivfm:VFMJ11_1394.
PATRICi20121250. VBIVibFis37164_1340.

Phylogenomic databases

eggNOGiCOG0687.
HOGENOMiHOG000263814.
KOiK11069.
OMAiMPDAPIG.
OrthoDBiEOG66XBH9.

Family and domain databases

InterProiIPR001188. Sperm_putr-bd.
[Graphical view]
PANTHERiPTHR30222:SF4. PTHR30222:SF4. 1 hit.
PIRSFiPIRSF019574. Periplasmic_polyamine_BP. 1 hit.
PRINTSiPR00909. SPERMDNBNDNG.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Vibrio fischeri strain MJ11."
    Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
    Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MJ11Imported.

Entry informationi

Entry nameiB5FE48_VIBFM
AccessioniPrimary (citable) accession number: B5FE48
Entry historyi
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: June 24, 2015
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.