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B5FE48 (B5FE48_VIBFM) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putrescine-binding periplasmic protein PIRNR PIRNR019574
Gene names
Ordered Locus Names:VFMJ11_1394 EMBL ACH66432.1
OrganismVibrio fischeri (strain MJ11) [Complete proteome] [HAMAP] EMBL ACH66432.1
Taxonomic identifier388396 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length344 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Required for the activity of the bacterial periplasmic transport system of putrescine By similarity. PIRNR PIRNR019574

Subcellular location

Periplasm By similarity PIRNR PIRNR019574.

Sequence similarities

Belongs to the bacterial solute-binding protein PotD/PotF family. PIRNR PIRNR019574

Ontologies

Keywords
   Biological processTransport PIRNR PIRNR019574
   Cellular componentPeriplasm PIRNR PIRNR019574
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpolyamine transport

Inferred from electronic annotation. Source: InterPro

   Cellular_componentperiplasmic space

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionpolyamine binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B5FE48 [UniParc].

Last modified October 14, 2008. Version 1.
Checksum: 6EFD8992FDA5B48A

FASTA34438,406
        10         20         30         40         50         60 
MNKMAAFFTG TACALALTMN VANAKENDEL VFMNWGPYIN SDILEEFTKE TGIKVIYSTY 

        70         80         90        100        110        120 
ESNETLYAKM KAHNKGYDLV VPSTYFVAKM RDEKMLQPID KSKLSNFTQL DTNYLDKPFD 

       130        140        150        160        170        180 
PKNEYSIPHV VAITGLAVNT EMYNPDDFNS WGDLWNPEFE GQLMLMDDTR EVFHIALRKL 

       190        200        210        220        230        240 
GYSGNSTNPK EIDEAYAELQ KLMPNVLVFN SDNPGAPYMA GEVGLGMLWN GSAAAAQAEG 

       250        260        270        280        290        300 
LPIKLIFPKE GGIGWVDNFA IPSGANNVEA AHKMIDFLLR PEIAARISAD TGYLTAVKAS 

       310        320        330        340 
NDKFKDVAPL FPSQEDLDRV EWQSAVGDMT VKYEEYFLKL KAGQ 

« Hide

References

[1]"Complete sequence of Vibrio fischeri strain MJ11."
Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MJ11.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001139 Genomic DNA. Translation: ACH66432.1.
RefSeqYP_002156113.1. NC_011184.1.

3D structure databases

ProteinModelPortalB5FE48.
SMRB5FE48. Positions 27-343.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING388396.VFMJ11_1394.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACH66432; ACH66432; VFMJ11_1394.
GeneID6807781.
KEGGvfm:VFMJ11_1394.
PATRIC20121250. VBIVibFis37164_1340.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0687.
HOGENOMHOG000263814.
KOK11069.
OMAMPDAPIG.
OrthoDBEOG66XBH9.

Family and domain databases

InterProIPR001188. Sperm_putr-bd.
[Graphical view]
PIRSFPIRSF019574. Periplasmic_polyamine_BP. 1 hit.
PRINTSPR00909. SPERMDNBNDNG.
ProtoNetSearch...

Entry information

Entry nameB5FE48_VIBFM
AccessionPrimary (citable) accession number: B5FE48
Entry history
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: May 14, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)