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Protein

Putrescine-binding periplasmic protein

Gene

VFMJ11_1394

Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Required for the activity of the bacterial periplasmic transport system of putrescine.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciVFIS388396:G13HN-1395-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putrescine-binding periplasmic proteinUniRule annotation
Gene namesi
Ordered Locus Names:VFMJ11_1394Imported
OrganismiVibrio fischeri (strain MJ11)Imported
Taxonomic identifieri388396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
Proteomesi
  • UP000001857 Componenti: Chromosome I

Subcellular locationi

  • Periplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

PeriplasmUniRule annotation

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 24Sequence analysisAdd BLAST24
ChainiPRO_500283343425 – 344Putrescine-binding periplasmic proteinSequence analysisAdd BLAST320

Structurei

3D structure databases

ProteinModelPortaliB5FE48.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the bacterial solute-binding protein PotD/PotF family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

HOGENOMiHOG000263814.
KOiK11069.
OMAiMAREIGI.
OrthoDBiPOG091H05D9.

Family and domain databases

InterProiIPR001188. Sperm_putr-bd.
[Graphical view]
PIRSFiPIRSF019574. Periplasmic_polyamine_BP. 1 hit.
PRINTSiPR00909. SPERMDNBNDNG.

Sequencei

Sequence statusi: Complete.

B5FE48-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKMAAFFTG TACALALTMN VANAKENDEL VFMNWGPYIN SDILEEFTKE
60 70 80 90 100
TGIKVIYSTY ESNETLYAKM KAHNKGYDLV VPSTYFVAKM RDEKMLQPID
110 120 130 140 150
KSKLSNFTQL DTNYLDKPFD PKNEYSIPHV VAITGLAVNT EMYNPDDFNS
160 170 180 190 200
WGDLWNPEFE GQLMLMDDTR EVFHIALRKL GYSGNSTNPK EIDEAYAELQ
210 220 230 240 250
KLMPNVLVFN SDNPGAPYMA GEVGLGMLWN GSAAAAQAEG LPIKLIFPKE
260 270 280 290 300
GGIGWVDNFA IPSGANNVEA AHKMIDFLLR PEIAARISAD TGYLTAVKAS
310 320 330 340
NDKFKDVAPL FPSQEDLDRV EWQSAVGDMT VKYEEYFLKL KAGQ
Length:344
Mass (Da):38,406
Last modified:October 14, 2008 - v1
Checksum:i6EFD8992FDA5B48A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001139 Genomic DNA. Translation: ACH66432.1.
RefSeqiWP_005419251.1. NC_011184.1.

Genome annotation databases

EnsemblBacteriaiACH66432; ACH66432; VFMJ11_1394.
KEGGivfm:VFMJ11_1394.
PATRICi20121250. VBIVibFis37164_1340.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001139 Genomic DNA. Translation: ACH66432.1.
RefSeqiWP_005419251.1. NC_011184.1.

3D structure databases

ProteinModelPortaliB5FE48.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACH66432; ACH66432; VFMJ11_1394.
KEGGivfm:VFMJ11_1394.
PATRICi20121250. VBIVibFis37164_1340.

Phylogenomic databases

HOGENOMiHOG000263814.
KOiK11069.
OMAiMAREIGI.
OrthoDBiPOG091H05D9.

Enzyme and pathway databases

BioCyciVFIS388396:G13HN-1395-MONOMER.

Family and domain databases

InterProiIPR001188. Sperm_putr-bd.
[Graphical view]
PIRSFiPIRSF019574. Periplasmic_polyamine_BP. 1 hit.
PRINTSiPR00909. SPERMDNBNDNG.
ProtoNetiSearch...

Entry informationi

Entry nameiB5FE48_VIBFM
AccessioniPrimary (citable) accession number: B5FE48
Entry historyi
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: November 2, 2016
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.