B5FE31 (B5FE31_VIBFM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Cytochrome c oxidase, Cbb3-type, subunit I EMBL ACH66632.1
EC=1.9.3.1 EMBL ACH66632.1

Gene names

Name:	ccoN EMBL ACH66632.1
Ordered Locus Names:	VFMJ11_1377 EMBL ACH66632.1

Organism

Vibrio fischeri (strain MJ11) [Complete proteome] [HAMAP] EMBL ACH66632.1

Taxonomic identifier

388396 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio › Vibrio fischeri

Protein attributes

Sequence length	476 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the heme-copper respiratory oxidase family. RuleBase RU000370

Ontologies

Keywords
Biological process	Electron transport Respiratory chain RuleBase RU000370 Transport
Cellular component	Membrane
Domain	Transmembrane RuleBase RU000370
Ligand	Heme RuleBase RU000370 Iron Metal-binding
Molecular function	Oxidoreductase RuleBase RU000370 EMBL ACH66632.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	aerobic respiration Inferred from electronic annotation. Source: InterPro electron transport chain Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane respiratory chain complex IV Inferred from electronic annotation. Source: InterPro
Molecular_function	cytochrome-c oxidase activity Inferred from electronic annotation. Source: EC electron carrier activity Inferred from electronic annotation. Source: InterPro heme binding Inferred from electronic annotation. Source: InterPro iron ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B5FE31 [UniParc]. Last modified October 14, 2008. Version 1. Checksum: 88228D616A583E46	FASTA	476	53,632
	10 20 30 40 50 60 MSQVQQHEQN YNYTVVRQFS LVTILWGIVG MGVGVLIAAQ LVWPQLNFDT PWLTYSRLRP 70 80 90 100 110 120 LHTNAVIFAF GTSALFATSY YVVQRTCQTR LFGGPLVAFT FWGWQAIILA AAITLPLGIT 130 140 150 160 170 180 SGKEYAELEW PIDIAITLVW VAYAIVFFGT LFKRKTSHIY VANWFFGAFI LTVAVLHIVN 190 200 210 220 230 240 SLAVPVSLTK SYSMYSGAVD AMVQWWYGHN AVGFLLTAGF LGMMYYFVPK QAERPVYSYR 250 260 270 280 290 300 LSIVHFWALV SLYIWAGPHH LHYTALPDWT QSLGMVMSLV LFAPSWGGMI NGIMTLSGAW 310 320 330 340 350 360 HKLRYDPILR FLIVSLSFYG MSTFEGPMMA IKSVNALSHY TDWTIGHVHS GALGWVAMVS 370 380 390 400 410 420 IGSLYHLIPK LFGQERMYSV SLINVHFWLA TIGTVFYIVA MWISGVMQGL MWRAVNADGT 430 440 450 460 470 LTYSFVESLE ASYPFYFVRF IGGLIFLSGM FLLAYNTYKT ITAPKNSLKA IQQPAQ

References

[1]

"Complete sequence of Vibrio fischeri strain MJ11." Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C. Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MJ11.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001139 Genomic DNA. Translation: ACH66632.1.
RefSeq	YP_002156096.1. NC_011184.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	388396.VFMJ11_1377.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACH66632; ACH66632; VFMJ11_1377.
GeneID	6805555.
KEGG	vfm:VFMJ11_1377.
PATRIC	20121216. VBIVibFis37164_1323.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3278.
HOGENOM	HOG000277908.
KO	K00404.
OMA	ITIVWVA.
ProtClustDB	PRK14488.
Family and domain databases
Gene3D	1.20.210.10. 1 hit.
InterPro	IPR000883. Cyt_c_Oxase_su1. IPR023615. Cyt_c_Oxase_su1_BS. IPR023616. Cyt_c_Oxase_su1_dom. IPR004677. Cyt_c_oxidase_cbb3_su1. [Graphical view]
PANTHER	PTHR10422. PTHR10422. 1 hit.
Pfam	PF00115. COX1. 1 hit. [Graphical view]
SUPFAM	SSF81442. COX1. 1 hit.
TIGRFAMs	TIGR00780. ccoN. 1 hit.
PROSITE	PS50855. COX1. 1 hit. PS00077. COX1_CUB. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B5FE31_VIBFM

Accession

Primary (citable) accession number: B5FE31

Entry history

Integrated into UniProtKB/TrEMBL:	October 14, 2008
Last sequence update:	October 14, 2008
Last modified:	May 1, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)