B5FDS0 (B5FDS0_VIBFM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Cystathionine beta-lyase EMBL ACH66069.1
EC=4.4.1.8 EMBL ACH66069.1

Gene names

Name:	metC EMBL ACH66069.1
Ordered Locus Names:	VFMJ11_1264

Organism

Vibrio fischeri (strain MJ11) [Complete proteome] [HAMAP] EMBL ACH66069.1

Taxonomic identifier

388396 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio

Protein attributes

Sequence length	395 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL ACH66069.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cellular amino acid metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	cystathionine beta-lyase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B5FDS0 [UniParc]. Last modified October 14, 2008. Version 1. Checksum: 823233170084314C	FASTA	395	43,944
	10 20 30 40 50 60 MSEKLETKYV TAGRSKKWTK GVVNPPVQRA STVVFNTVAE KNYAMINRAK QTLFYGRRGT 70 80 90 100 110 120 ETHFALQDAM VELEGGAGCA LYPCGTAAIA NAILTFVKTG DHILMVDGCY EPTRDYCETI 130 140 150 160 170 180 LKRMGIETTY YDPMIGEGIR ELIRPNTTVL FTESPCSITM EVQDLPTLSR IAHETDITVI 190 200 210 220 230 240 LDNTWGAGVN LAPFDHGVDI SVQAATKYIV GHSDVMLGTA VANEKHWDQL REQSYLMGQC 250 260 270 280 290 300 ISPDDAYLAM RGIRTMGVRL KQHEKSSIKV AKWLEAHPLV DHVRHPALAS CPGHEFYQRD 310 320 330 340 350 360 FKGCNGLFSF VLKQSDSKAT TALLDGMTHF SMGYSWGGFE SLILANEPRS FNALRTIANP 370 380 390 NFEGTLIRVH IGLEDVEDLI HDLDEGLQRY QDALN

References

[1]

"Complete sequence of Vibrio fischeri strain MJ11." Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C. Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001139 Genomic DNA. Translation: ACH66069.1.
RefSeq	YP_002155985.1. NC_011184.1.
3D structure databases
ProteinModelPortal	B5FDS0.
SMR	B5FDS0. Positions 4-389.
ModBase	Search...
Protein-protein interaction databases
STRING	B5FDS0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6806416.
GenomeReviews	Gene locus VFMJ11_1264 in contig CP001139_GR.
KEGG	vfm:VFMJ11_1264.
PATRIC	20120988. VBIVibFis37164_1211.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG754729.
OMA	REQSYLM.
ProtClustDB	PRK09028.
Family and domain databases
InterPro	IPR000277. Cys/Met-Metab_PyrdxlP-dep_enz. IPR006233. Cys_b_lyase_bac. IPR015424. PyrdxlP-dep_Trfase_major_dom. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Gene3D	G3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit. G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KO	K01760.
PANTHER	PTHR11808:SF8. Cys_b_lyase_bac. 1 hit. PTHR11808. Cys_Met_Meta_PP. 1 hit.
Pfam	PF01053. Cys_Met_Meta_PP. 1 hit. [Graphical view]
PIRSF	PIRSF001434. CGS. 1 hit.
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01324. Cysta_beta_ly_B. 1 hit.
PROSITE	PS00868. CYS_MET_METAB_PP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B5FDS0_VIBFM

Accession

Primary (citable) accession number: B5FDS0

Entry history

Integrated into UniProtKB/TrEMBL:	October 14, 2008
Last sequence update:	October 14, 2008
Last modified:	January 25, 2012
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)