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B5FDL2 (B5FDL2_VIBFM) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Alpha-amylase RuleBase RU361134

EC=3.2.1.1 RuleBase RU361134
Gene names
Ordered Locus Names:VFMJ11_1206 EMBL ACH65452.1
OrganismVibrio fischeri (strain MJ11) [Complete proteome] [HAMAP] EMBL ACH65452.1
Taxonomic identifier388396 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length460 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units. RuleBase RU361134

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Sequences

Sequence LengthMass (Da)Tools
B5FDL2 [UniParc].

Last modified October 14, 2008. Version 1.
Checksum: A546D7D751F9515F

FASTA46052,971
        10         20         30         40         50         60 
MSQATQQHSD QVPIVSNVIL HAFDWSYQRI TEQAELIAQL GYRSVLVSPA MKSLNLPSGT 

        70         80         90        100        110        120 
KWWQRYQPQD YRLIDNPLGD TFDFKRMVER LTELNIWVYV DVVFNHMANE SDIRADLEYP 

       130        140        150        160        170        180 
NQWDREDYAK DPEKYEALTL FGDLSEPLFT ESDFVEAFGI ENWNDKWEVQ NGRISGGPHD 

       190        200        210        220        230        240 
PGLPTLADNE HVIAQQRAYL KALKAIGVKG FRIDAAKHMS LEHLEKVWDE EITHDIHIFG 

       250        260        270        280        290        300 
EIITDGGATK EEYETFLSPY LQETKLGAYD FPLFNTLYQA LEGEGSLTSL IDPYIYGMAL 

       310        320        330        340        350        360 
SPLRAITFAT THDIPNNQVF QDLVMSEENE WLAYAYLFGR DGGIPLIYSE NEISGFKNTE 

       370        380        390        400        410        420 
GNPRWKDEWC SKRMTQLIGF YHEMYGETQT QVEASDEHLV FARGERGLVA INKSDHNIEV 

       430        440        450        460 
NVAVKADIVW LEHTSQTYYA PQQGNLRFFI PAKSYLLFSR 

« Hide

References

[1]"Complete sequence of Vibrio fischeri strain MJ11."
Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MJ11.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001139 Genomic DNA. Translation: ACH65452.1.
RefSeqYP_002155927.1. NC_011184.1.

3D structure databases

ProteinModelPortalB5FDL2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING388396.VFMJ11_1206.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACH65452; ACH65452; VFMJ11_1206.
GeneID6805635.
KEGGvfm:VFMJ11_1206.
PATRIC20120874. VBIVibFis37164_1154.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000274290.
KOK01176.
OMAWQRYQPQ.
OrthoDBEOG6RZB1B.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB5FDL2_VIBFM
AccessionPrimary (citable) accession number: B5FDL2
Entry history
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: July 9, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)