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B5FDL2

- B5FDL2_VIBFM

UniProt

B5FDL2 - B5FDL2_VIBFM

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Protein
Alpha-amylase
Gene
VFMJ11_1206
Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:VFMJ11_1206Imported
OrganismiVibrio fischeri (strain MJ11)Imported
Taxonomic identifieri388396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001857: Chromosome I

Interactioni

Protein-protein interaction databases

STRINGi388396.VFMJ11_1206.

Structurei

3D structure databases

ProteinModelPortaliB5FDL2.

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000274290.
KOiK01176.
OMAiWQRYQPQ.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

B5FDL2-1 [UniParc]FASTAAdd to Basket

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MSQATQQHSD QVPIVSNVIL HAFDWSYQRI TEQAELIAQL GYRSVLVSPA    50
MKSLNLPSGT KWWQRYQPQD YRLIDNPLGD TFDFKRMVER LTELNIWVYV 100
DVVFNHMANE SDIRADLEYP NQWDREDYAK DPEKYEALTL FGDLSEPLFT 150
ESDFVEAFGI ENWNDKWEVQ NGRISGGPHD PGLPTLADNE HVIAQQRAYL 200
KALKAIGVKG FRIDAAKHMS LEHLEKVWDE EITHDIHIFG EIITDGGATK 250
EEYETFLSPY LQETKLGAYD FPLFNTLYQA LEGEGSLTSL IDPYIYGMAL 300
SPLRAITFAT THDIPNNQVF QDLVMSEENE WLAYAYLFGR DGGIPLIYSE 350
NEISGFKNTE GNPRWKDEWC SKRMTQLIGF YHEMYGETQT QVEASDEHLV 400
FARGERGLVA INKSDHNIEV NVAVKADIVW LEHTSQTYYA PQQGNLRFFI 450
PAKSYLLFSR 460
Length:460
Mass (Da):52,971
Last modified:October 14, 2008 - v1
Checksum:iA546D7D751F9515F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001139 Genomic DNA. Translation: ACH65452.1.
RefSeqiYP_002155927.1. NC_011184.1.

Genome annotation databases

EnsemblBacteriaiACH65452; ACH65452; VFMJ11_1206.
GeneIDi6805635.
KEGGivfm:VFMJ11_1206.
PATRICi20120874. VBIVibFis37164_1154.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001139 Genomic DNA. Translation: ACH65452.1 .
RefSeqi YP_002155927.1. NC_011184.1.

3D structure databases

ProteinModelPortali B5FDL2.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 388396.VFMJ11_1206.

Protein family/group databases

CAZyi GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACH65452 ; ACH65452 ; VFMJ11_1206 .
GeneIDi 6805635.
KEGGi vfm:VFMJ11_1206.
PATRICi 20120874. VBIVibFis37164_1154.

Phylogenomic databases

eggNOGi COG0366.
HOGENOMi HOG000274290.
KOi K01176.
OMAi WQRYQPQ.
OrthoDBi EOG6RZB1B.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
PRINTSi PR00110. ALPHAAMYLASE.
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Vibrio fischeri strain MJ11."
    Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
    Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MJ11.

Entry informationi

Entry nameiB5FDL2_VIBFM
AccessioniPrimary (citable) accession number: B5FDL2
Entry historyi
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: July 9, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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