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B5FDL2

- B5FDL2_VIBFM

UniProt

B5FDL2 - B5FDL2_VIBFM

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Protein

Alpha-amylase

Gene

VFMJ11_1206

Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:VFMJ11_1206Imported
OrganismiVibrio fischeri (strain MJ11)Imported
Taxonomic identifieri388396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001857: Chromosome I

Interactioni

Protein-protein interaction databases

STRINGi388396.VFMJ11_1206.

Structurei

3D structure databases

ProteinModelPortaliB5FDL2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000274290.
KOiK01176.
OMAiWQRYQPQ.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

B5FDL2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSQATQQHSD QVPIVSNVIL HAFDWSYQRI TEQAELIAQL GYRSVLVSPA
60 70 80 90 100
MKSLNLPSGT KWWQRYQPQD YRLIDNPLGD TFDFKRMVER LTELNIWVYV
110 120 130 140 150
DVVFNHMANE SDIRADLEYP NQWDREDYAK DPEKYEALTL FGDLSEPLFT
160 170 180 190 200
ESDFVEAFGI ENWNDKWEVQ NGRISGGPHD PGLPTLADNE HVIAQQRAYL
210 220 230 240 250
KALKAIGVKG FRIDAAKHMS LEHLEKVWDE EITHDIHIFG EIITDGGATK
260 270 280 290 300
EEYETFLSPY LQETKLGAYD FPLFNTLYQA LEGEGSLTSL IDPYIYGMAL
310 320 330 340 350
SPLRAITFAT THDIPNNQVF QDLVMSEENE WLAYAYLFGR DGGIPLIYSE
360 370 380 390 400
NEISGFKNTE GNPRWKDEWC SKRMTQLIGF YHEMYGETQT QVEASDEHLV
410 420 430 440 450
FARGERGLVA INKSDHNIEV NVAVKADIVW LEHTSQTYYA PQQGNLRFFI
460
PAKSYLLFSR
Length:460
Mass (Da):52,971
Last modified:October 14, 2008 - v1
Checksum:iA546D7D751F9515F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001139 Genomic DNA. Translation: ACH65452.1.
RefSeqiYP_002155927.1. NC_011184.1.

Genome annotation databases

EnsemblBacteriaiACH65452; ACH65452; VFMJ11_1206.
GeneIDi6805635.
KEGGivfm:VFMJ11_1206.
PATRICi20120874. VBIVibFis37164_1154.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001139 Genomic DNA. Translation: ACH65452.1 .
RefSeqi YP_002155927.1. NC_011184.1.

3D structure databases

ProteinModelPortali B5FDL2.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 388396.VFMJ11_1206.

Protein family/group databases

CAZyi GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACH65452 ; ACH65452 ; VFMJ11_1206 .
GeneIDi 6805635.
KEGGi vfm:VFMJ11_1206.
PATRICi 20120874. VBIVibFis37164_1154.

Phylogenomic databases

eggNOGi COG0366.
HOGENOMi HOG000274290.
KOi K01176.
OMAi WQRYQPQ.
OrthoDBi EOG6RZB1B.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
PRINTSi PR00110. ALPHAAMYLASE.
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Vibrio fischeri strain MJ11."
    Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
    Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MJ11Imported.

Entry informationi

Entry nameiB5FDL2_VIBFM
AccessioniPrimary (citable) accession number: B5FDL2
Entry historyi
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: October 1, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3