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B5FDL2

- B5FDL2_VIBFM

UniProt

B5FDL2 - B5FDL2_VIBFM

Protein

Alpha-amylase

Gene

VFMJ11_1206

Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (14 Oct 2008)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. cation binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    GlycosidaseUniRule annotationImported, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolismUniRule annotation

    Protein family/group databases

    CAZyiGH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:VFMJ11_1206Imported
    OrganismiVibrio fischeri (strain MJ11)Imported
    Taxonomic identifieri388396 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
    ProteomesiUP000001857: Chromosome I

    Interactioni

    Protein-protein interaction databases

    STRINGi388396.VFMJ11_1206.

    Structurei

    3D structure databases

    ProteinModelPortaliB5FDL2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0366.
    HOGENOMiHOG000274290.
    KOiK01176.
    OMAiWQRYQPQ.
    OrthoDBiEOG6RZB1B.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PRINTSiPR00110. ALPHAAMYLASE.
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B5FDL2-1 [UniParc]FASTAAdd to Basket

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    MSQATQQHSD QVPIVSNVIL HAFDWSYQRI TEQAELIAQL GYRSVLVSPA    50
    MKSLNLPSGT KWWQRYQPQD YRLIDNPLGD TFDFKRMVER LTELNIWVYV 100
    DVVFNHMANE SDIRADLEYP NQWDREDYAK DPEKYEALTL FGDLSEPLFT 150
    ESDFVEAFGI ENWNDKWEVQ NGRISGGPHD PGLPTLADNE HVIAQQRAYL 200
    KALKAIGVKG FRIDAAKHMS LEHLEKVWDE EITHDIHIFG EIITDGGATK 250
    EEYETFLSPY LQETKLGAYD FPLFNTLYQA LEGEGSLTSL IDPYIYGMAL 300
    SPLRAITFAT THDIPNNQVF QDLVMSEENE WLAYAYLFGR DGGIPLIYSE 350
    NEISGFKNTE GNPRWKDEWC SKRMTQLIGF YHEMYGETQT QVEASDEHLV 400
    FARGERGLVA INKSDHNIEV NVAVKADIVW LEHTSQTYYA PQQGNLRFFI 450
    PAKSYLLFSR 460
    Length:460
    Mass (Da):52,971
    Last modified:October 14, 2008 - v1
    Checksum:iA546D7D751F9515F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001139 Genomic DNA. Translation: ACH65452.1.
    RefSeqiYP_002155927.1. NC_011184.1.

    Genome annotation databases

    EnsemblBacteriaiACH65452; ACH65452; VFMJ11_1206.
    GeneIDi6805635.
    KEGGivfm:VFMJ11_1206.
    PATRICi20120874. VBIVibFis37164_1154.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001139 Genomic DNA. Translation: ACH65452.1 .
    RefSeqi YP_002155927.1. NC_011184.1.

    3D structure databases

    ProteinModelPortali B5FDL2.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 388396.VFMJ11_1206.

    Protein family/group databases

    CAZyi GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACH65452 ; ACH65452 ; VFMJ11_1206 .
    GeneIDi 6805635.
    KEGGi vfm:VFMJ11_1206.
    PATRICi 20120874. VBIVibFis37164_1154.

    Phylogenomic databases

    eggNOGi COG0366.
    HOGENOMi HOG000274290.
    KOi K01176.
    OMAi WQRYQPQ.
    OrthoDBi EOG6RZB1B.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PRINTSi PR00110. ALPHAAMYLASE.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Vibrio fischeri strain MJ11."
      Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
      Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MJ11Imported.

    Entry informationi

    Entry nameiB5FDL2_VIBFM
    AccessioniPrimary (citable) accession number: B5FDL2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 14, 2008
    Last sequence update: October 14, 2008
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3