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B5FDE3 (B5FDE3_VIBFM) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=4.1.1.15 EMBL ACH65664.1
Gene names
Ordered Locus Names:VFMJ11_1137 EMBL ACH65664.1
OrganismVibrio fischeri (strain MJ11) [Complete proteome] [HAMAP] EMBL ACH65664.1
Taxonomic identifier388396 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length464 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Sequences

Sequence LengthMass (Da)Tools
B5FDE3 [UniParc].

Last modified October 14, 2008. Version 1.
Checksum: 51E50550E542FD6B

FASTA46452,582
        10         20         30         40         50         60 
MPLHSKNAVR DDLLDDIYSS ADLSLSMPKY KMPEQEHDPR HAYQVIHDEL MMDGNSRQNL 

        70         80         90        100        110        120 
ATFCQTWVED EVHKLMDECI DKNMIDKDEY PQTAELESRC VHMLADLWNS PDAENTLGCS 

       130        140        150        160        170        180 
TTGSSEAAML GGMALKWAWR EKMKKLGKPT DKPNMICGPV QVCWHKFARY WDIELREIPM 

       190        200        210        220        230        240 
EGDRLIMTPE EVIKRCDENT IGVVPTLGVT FTCQYEPVKA VHEALDKLQE ETGLDIPMHI 

       250        260        270        280        290        300 
DAASGGFLAP FCDPDLEWDF RLPRVKSINA SGHKFGLSPL GVGWVIWRDA SALHEDLIFN 

       310        320        330        340        350        360 
VNYLGGNMPT FALNFSRPGG QIVAQYYNFL RLGKEGYRKI HQACYDTAVY LSSEIEKLGM 

       370        380        390        400        410        420 
FEIIYDGKGG IPAMSWSLKE GVDPGFNLFD LSDRIRSRGW QIAAYAMPPK REDLVIMRIL 

       430        440        450        460 
VRHGFSRDQA DLLVADLKHC VEFFAKHPIS HGSDELESSG FNHG 

« Hide

References

[1]"Complete sequence of Vibrio fischeri strain MJ11."
Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MJ11.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001139 Genomic DNA. Translation: ACH65664.1.
RefSeqYP_002155858.1. NC_011184.1.

3D structure databases

ProteinModelPortalB5FDE3.
SMRB5FDE3. Positions 8-448.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING388396.VFMJ11_1137.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACH65664; ACH65664; VFMJ11_1137.
GeneID6805725.
KEGGvfm:VFMJ11_1137.
PATRIC20120733. VBIVibFis37164_1084.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000070228.
KOK01580.
OMAPTFQINF.
OrthoDBEOG6TFCPW.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB5FDE3_VIBFM
AccessionPrimary (citable) accession number: B5FDE3
Entry history
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: May 14, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)