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Protein
Submitted name:

Glutamate decarboxylase

Gene

VFMJ11_0930

Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Glutamate decarboxylaseImported
Gene namesi
Ordered Locus Names:VFMJ11_0930Imported
OrganismiVibrio fischeri (strain MJ11)Imported
Taxonomic identifieri388396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001857 Componenti: Chromosome I

Interactioni

Protein-protein interaction databases

STRINGi388396.VFMJ11_0930.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiSEEAHYC.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

B5FCJ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVTDNKTADA SFESLLRIFT VPEAPDSTLG IIEKELSQNL NQFLREHIVA
60 70 80 90 100
EEKPLTEIEK DFTDSSMPES PTYVSEHTEH LLDTLVSQSV HTSAPSFIGH
110 120 130 140 150
MTSALPYFLM PLSKIMIALN QNLVKIETSK AFTPLERQVL GMLHRLIFGQ
160 170 180 190 200
KDSFYQHWMH SADHSLGAFC SGGTIANITA LWVARNRLLK PEGDFEGIAK
210 220 230 240 250
QGLFAALTHY KCNGLAIFVS ERGHYSLKKA ADVLGIGQDG VIAVKTDNNN
260 270 280 290 300
RVCLDDLELK ITQAKAKNIK PLAIVGVAGT TETGSIDPLR ELANVAQREG
310 320 330 340 350
CHFHVDAAWG GATLMSNTYR HLLDGIDLAD SVTIDAHKQL YVPMGAGMVI
360 370 380 390 400
FKDPELMSSI QHHAEYILRK GSKDLGRHTL EGSRSGMAML LYSCFNVISR
410 420 430 440 450
PGYELLINQS IEKAHYFADL IQQQDDFELI TDPELCLLTY RYVPSNVKAA
460 470 480 490 500
LAIATDEQKL EIYEHLDNLT KYIQKTQRET GKSFVSRTRL TPEAYQHQPT
510 520 530 540
IVFRVVLANP LTTKEILQNV LIEQREIASS SEISLPLLNQ IVDKILH
Length:547
Mass (Da):61,011
Last modified:October 14, 2008 - v1
Checksum:i69572E3FC7F7F31F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001139 Genomic DNA. Translation: ACH65184.1.
RefSeqiYP_002155654.1. NC_011184.1.

Genome annotation databases

EnsemblBacteriaiACH65184; ACH65184; VFMJ11_0930.
KEGGivfm:VFMJ11_0930.
PATRICi20120323. VBIVibFis37164_0882.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001139 Genomic DNA. Translation: ACH65184.1.
RefSeqiYP_002155654.1. NC_011184.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi388396.VFMJ11_0930.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACH65184; ACH65184; VFMJ11_0930.
KEGGivfm:VFMJ11_0930.
PATRICi20120323. VBIVibFis37164_0882.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiSEEAHYC.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Vibrio fischeri strain MJ11."
    Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
    Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MJ11Imported.

Entry informationi

Entry nameiB5FCJ1_VIBFM
AccessioniPrimary (citable) accession number: B5FCJ1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: April 29, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.