Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

B5FCJ1 (B5FCJ1_VIBFM) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:VFMJ11_0930 EMBL ACH65184.1
OrganismVibrio fischeri (strain MJ11) [Complete proteome] [HAMAP] EMBL ACH65184.1
Taxonomic identifier388396 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length547 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
B5FCJ1 [UniParc].

Last modified October 14, 2008. Version 1.
Checksum: 69572E3FC7F7F31F

FASTA54761,011
        10         20         30         40         50         60 
MVTDNKTADA SFESLLRIFT VPEAPDSTLG IIEKELSQNL NQFLREHIVA EEKPLTEIEK 

        70         80         90        100        110        120 
DFTDSSMPES PTYVSEHTEH LLDTLVSQSV HTSAPSFIGH MTSALPYFLM PLSKIMIALN 

       130        140        150        160        170        180 
QNLVKIETSK AFTPLERQVL GMLHRLIFGQ KDSFYQHWMH SADHSLGAFC SGGTIANITA 

       190        200        210        220        230        240 
LWVARNRLLK PEGDFEGIAK QGLFAALTHY KCNGLAIFVS ERGHYSLKKA ADVLGIGQDG 

       250        260        270        280        290        300 
VIAVKTDNNN RVCLDDLELK ITQAKAKNIK PLAIVGVAGT TETGSIDPLR ELANVAQREG 

       310        320        330        340        350        360 
CHFHVDAAWG GATLMSNTYR HLLDGIDLAD SVTIDAHKQL YVPMGAGMVI FKDPELMSSI 

       370        380        390        400        410        420 
QHHAEYILRK GSKDLGRHTL EGSRSGMAML LYSCFNVISR PGYELLINQS IEKAHYFADL 

       430        440        450        460        470        480 
IQQQDDFELI TDPELCLLTY RYVPSNVKAA LAIATDEQKL EIYEHLDNLT KYIQKTQRET 

       490        500        510        520        530        540 
GKSFVSRTRL TPEAYQHQPT IVFRVVLANP LTTKEILQNV LIEQREIASS SEISLPLLNQ 


IVDKILH 

« Hide

References

[1]"Complete sequence of Vibrio fischeri strain MJ11."
Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MJ11.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001139 Genomic DNA. Translation: ACH65184.1.
RefSeqYP_002155654.1. NC_011184.1.

3D structure databases

ProteinModelPortalB5FCJ1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING388396.VFMJ11_0930.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACH65184; ACH65184; VFMJ11_0930.
GeneID6805979.
KEGGvfm:VFMJ11_0930.
PATRIC20120323. VBIVibFis37164_0882.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000282553.
KOK01580.
OMAARYFRQP.
OrthoDBEOG6MSRZP.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB5FCJ1_VIBFM
AccessionPrimary (citable) accession number: B5FCJ1
Entry history
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: May 14, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)