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Protein

Phosphoenolpyruvate carboxylase

Gene

ppc

Organism
Vibrio fischeri (strain MJ11)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.UniRule annotation

Catalytic activityi

Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-.UniRule annotation

Cofactori

Mg2+UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei138 – 1381UniRule annotation
Active sitei543 – 5431UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. phosphoenolpyruvate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. carbon fixation Source: UniProtKB-HAMAP
  2. oxaloacetate metabolic process Source: UniProtKB-HAMAP
  3. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Biological processi

Carbon dioxide fixation

Keywords - Ligandi

Magnesium

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphoenolpyruvate carboxylaseUniRule annotation (EC:4.1.1.31UniRule annotation)
Short name:
PEPCUniRule annotation
Short name:
PEPCaseUniRule annotation
Gene namesi
Name:ppcUniRule annotation
Ordered Locus Names:VFMJ11_2420
OrganismiVibrio fischeri (strain MJ11)
Taxonomic identifieri388396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001857: Chromosome I

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 876876Phosphoenolpyruvate carboxylasePRO_1000129846Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi388396.VFMJ11_2420.

Structurei

3D structure databases

ProteinModelPortaliB5FBP8.
SMRiB5FBP8. Positions 4-876.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PEPCase type 1 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG2352.
HOGENOMiHOG000238648.
KOiK01595.
OMAiCGMGVIA.
OrthoDBiEOG6TJ7T8.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B5FBP8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNEKYAALKS NVSMLGHLLG NTIRDAHGEE LLAKVETIRK LSKTARAGSD
60 70 80 90 100
EDRNALIEEI KSLPDDQLTP VARAFSQFLN LTNMAEQYHT ISRHCEAHVC
110 120 130 140 150
EPDAISTLFS KLSQSNVSKL DTAQAVRELN IELVLTAHPT EIARRTMINK
160 170 180 190 200
LVKINECLSK LELGDISFSE RDKTERRLEQ LIAQAWHSDV IRQERPTPLD
210 220 230 240 250
EAKWGFAVVE NSLWQGIPEF LREFDQRLEG HLGEGLPIDA RPVHMSSWMG
260 270 280 290 300
GDRDGNPFVT HKITREVMLL SRWKAADLYL KDINELISEL SMVKCTDEVR
310 320 330 340 350
ELAGDQHEPY RAILKQLRTL LGDTLESLDA QMKGELVPNK AILTDADQLW
360 370 380 390 400
NPLYACYQSL HACGMGIIAD GSLLDTLRRV KAFGAHLVRL DIRQESTRHS
410 420 430 440 450
DVLSELTRYL GIGDYDQWSE QDKISFLVNE LSSKRPLLPR KWEPSPEVQE
460 470 480 490 500
VIDTCRVVAE QSKEALGSYV ISMARTASDV LAVHLLLQEA GCPFRMDVCP
510 520 530 540 550
LFETLDDLNR SKEVMEQLFS IDWYRGFIQN HQMVMIGYSD SAKDAGVMSA
560 570 580 590 600
GWAQYSAMEA LVEVCEKESI ELTLFHGRGG TIGRGGAPAH AALLSQPPKS
610 620 630 640 650
LKGGLRVTEQ GEMIRFKLGL PEVAVNSFNL YASAILEANL LPPPEPKQEW
660 670 680 690 700
RDLMEVLSEV SCEAYRNVVR GEKDFVPYFR AATPELELGK LPLGSRPAKR
710 720 730 740 750
NPNGGVESLR AIPWIFSWSQ NRLVLPAWLG AGEAIQYSID KGHQELLEEM
760 770 780 790 800
CREWPFFSTR LGMLEMVYTK CNPQMSEYYD QRLTDKSLWP LGERLRNQLQ
810 820 830 840 850
TDIKAVLNVE NNDHLMERDP WGSESIRLRN IYVDPLNMLQ AELLFRTRQQ
860 870
EETSPELEEA LMVTIAGIAA GMRNTG
Length:876
Mass (Da):99,011
Last modified:October 14, 2008 - v1
Checksum:iE7C7671A941C8AC1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001139 Genomic DNA. Translation: ACH67224.1.
RefSeqiYP_002157103.1. NC_011184.1.

Genome annotation databases

EnsemblBacteriaiACH67224; ACH67224; VFMJ11_2420.
GeneIDi6806079.
KEGGivfm:VFMJ11_2420.
PATRICi20123314. VBIVibFis37164_2332.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001139 Genomic DNA. Translation: ACH67224.1.
RefSeqiYP_002157103.1. NC_011184.1.

3D structure databases

ProteinModelPortaliB5FBP8.
SMRiB5FBP8. Positions 4-876.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi388396.VFMJ11_2420.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACH67224; ACH67224; VFMJ11_2420.
GeneIDi6806079.
KEGGivfm:VFMJ11_2420.
PATRICi20123314. VBIVibFis37164_2332.

Phylogenomic databases

eggNOGiCOG2352.
HOGENOMiHOG000238648.
KOiK01595.
OMAiCGMGVIA.
OrthoDBiEOG6TJ7T8.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Vibrio fischeri strain MJ11."
    Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
    Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MJ11.

Entry informationi

Entry nameiCAPP_VIBFM
AccessioniPrimary (citable) accession number: B5FBP8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: October 14, 2008
Last modified: January 7, 2015
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.