B5FAV6 (B5FAV6_VIBFM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

VFMJ11_0627 EMBL ACH65531.1

Organism

Vibrio fischeri (strain MJ11) [Complete proteome] [HAMAP] EMBL ACH65531.1

Taxonomic identifier

388396 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio › Vibrio fischeri

Protein attributes

Sequence length	259 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886 EMBL ACH65531.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B5FAV6 [UniParc]. Last modified October 14, 2008. Version 1. Checksum: F10DE053D7794025	FASTA	259	30,035
	10 20 30 40 50 60 MNTEEITAVN DELLEEQVEP IELEIVYRDE HLIAINKPAG MLVHRSWLDK HETVFAMQTL 70 80 90 100 110 120 RDQIGQHVFP LHRLDRPTSG ILFFALSSEI AAQVSPLFAS REIKKTYHAI VRGWIEEADT 130 140 150 160 170 180 LDYPLKKELD KIADKKASQE VEAKEAITEY KPLAKVELPY STGKFPTTRY CLMELKPHTG 190 200 210 220 230 240 RKHQLRRHMA HLRHPIVGDT SHGDGKHNRL FKEKLDSHRL LLHASELNFT HPITGENIVI 250 KADFDETWKK LFTEFGWDF

References

[1]

"Complete sequence of Vibrio fischeri strain MJ11." Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C. Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MJ11.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001139 Genomic DNA. Translation: ACH65531.1.
RefSeq	YP_002155370.1. NC_011184.1.
3D structure databases
ProteinModelPortal	B5FAV6.
ModBase	Search...
Protein-protein interaction databases
STRING	388396.VFMJ11_0627.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACH65531; ACH65531; VFMJ11_0627.
GeneID	6806174.
KEGG	vfm:VFMJ11_0627.
PATRIC	20119719. VBIVibFis37164_0599.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0564.
HOGENOM	HOG000275920.
KO	K06175.
OMA	FHPIMGD.
ProtClustDB	PRK11112.
Family and domain databases
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B5FAV6_VIBFM

Accession

Primary (citable) accession number: B5FAV6

Entry history

Integrated into UniProtKB/TrEMBL:	October 14, 2008
Last sequence update:	October 14, 2008
Last modified:	May 1, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)