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B5FA40

- B5FA40_VIBFM

UniProt

B5FA40 - B5FA40_VIBFM

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Protein
Superoxide dismutase [Cu-Zn]
Gene
sodC_1, VFMJ11_2160
Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Binds 1 copper ion per subunit By similarity.UniRule annotation
Binds 1 zinc ion per subunit By similarity.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

    Complete GO annotation...

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotation

    Keywords - Ligandi

    CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
    Gene namesi
    Name:sodC_1Imported
    Ordered Locus Names:VFMJ11_2160Imported
    OrganismiVibrio fischeri (strain MJ11)Imported
    Taxonomic identifieri388396 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
    ProteomesiUP000001857: Chromosome I

    Interactioni

    Protein-protein interaction databases

    STRINGi388396.VFMJ11_2160.

    Structurei

    3D structure databases

    ProteinModelPortaliB5FA40.
    SMRiB5FA40. Positions 24-170.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2032.
    HOGENOMiHOG000263449.
    KOiK04565.
    OMAiDHPKPLG.
    OrthoDBiEOG6K13RS.

    Family and domain databases

    Gene3Di2.60.40.200. 1 hit.
    InterProiIPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view]
    PfamiPF00080. Sod_Cu. 1 hit.
    [Graphical view]
    SUPFAMiSSF49329. SSF49329. 1 hit.
    PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
    PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B5FA40-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKKHTFFAAF CFLSTSSIAH SAIVNMTELN SKTPVGQITI TNTEYGTVFT    50
    PELSNLPSGL HGFHIHTNPS CESATINNKT ILGGAAGGHY DPENTGKHGF 100
    PWTTNNHLGD LPALYVDHHG MANQPVIAPR IKLSDLKGRS IMIHAGGDNH 150
    SDHPAALGGG GARLVCGVIK 170
    Length:170
    Mass (Da):17,988
    Last modified:October 14, 2008 - v1
    Checksum:iD61144686EE103F1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001139 Genomic DNA. Translation: ACH65234.1.
    RefSeqiWP_012532914.1. NC_011184.1.
    YP_002156854.1. NC_011184.1.

    Genome annotation databases

    EnsemblBacteriaiACH65234; ACH65234; VFMJ11_2160.
    GeneIDi6805948.
    KEGGivfm:VFMJ11_2160.
    PATRICi20122788. VBIVibFis37164_2084.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001139 Genomic DNA. Translation: ACH65234.1 .
    RefSeqi WP_012532914.1. NC_011184.1.
    YP_002156854.1. NC_011184.1.

    3D structure databases

    ProteinModelPortali B5FA40.
    SMRi B5FA40. Positions 24-170.
    ModBasei Search...

    Protein-protein interaction databases

    STRINGi 388396.VFMJ11_2160.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACH65234 ; ACH65234 ; VFMJ11_2160 .
    GeneIDi 6805948.
    KEGGi vfm:VFMJ11_2160.
    PATRICi 20122788. VBIVibFis37164_2084.

    Phylogenomic databases

    eggNOGi COG2032.
    HOGENOMi HOG000263449.
    KOi K04565.
    OMAi DHPKPLG.
    OrthoDBi EOG6K13RS.

    Family and domain databases

    Gene3Di 2.60.40.200. 1 hit.
    InterProi IPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view ]
    Pfami PF00080. Sod_Cu. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49329. SSF49329. 1 hit.
    PROSITEi PS00087. SOD_CU_ZN_1. 1 hit.
    PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Vibrio fischeri strain MJ11."
      Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
      Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MJ11.

    Entry informationi

    Entry nameiB5FA40_VIBFM
    AccessioniPrimary (citable) accession number: B5FA40
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 14, 2008
    Last sequence update: October 14, 2008
    Last modified: September 3, 2014
    This is version 43 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    External Data

    Dasty 3

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