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B5FA40

- B5FA40_VIBFM

UniProt

B5FA40 - B5FA40_VIBFM

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Protein

Superoxide dismutase [Cu-Zn]

Gene
sodC_1, VFMJ11_2160
Organism
Vibrio fischeri (strain MJ11)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Binds 1 copper ion per subunit By similarity.UniRule annotation
Binds 1 zinc ion per subunit By similarity.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodC_1Imported
Ordered Locus Names:VFMJ11_2160Imported
OrganismiVibrio fischeri (strain MJ11)Imported
Taxonomic identifieri388396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000001857: Chromosome I

Interactioni

Protein-protein interaction databases

STRINGi388396.VFMJ11_2160.

Structurei

3D structure databases

ProteinModelPortaliB5FA40.
SMRiB5FA40. Positions 24-170.

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG2032.
HOGENOMiHOG000263449.
KOiK04565.
OMAiDHPKPLG.
OrthoDBiEOG6K13RS.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B5FA40-1 [UniParc]FASTAAdd to Basket

« Hide

MKKHTFFAAF CFLSTSSIAH SAIVNMTELN SKTPVGQITI TNTEYGTVFT    50
PELSNLPSGL HGFHIHTNPS CESATINNKT ILGGAAGGHY DPENTGKHGF 100
PWTTNNHLGD LPALYVDHHG MANQPVIAPR IKLSDLKGRS IMIHAGGDNH 150
SDHPAALGGG GARLVCGVIK 170
Length:170
Mass (Da):17,988
Last modified:October 14, 2008 - v1
Checksum:iD61144686EE103F1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001139 Genomic DNA. Translation: ACH65234.1.
RefSeqiWP_012532914.1. NC_011184.1.
YP_002156854.1. NC_011184.1.

Genome annotation databases

EnsemblBacteriaiACH65234; ACH65234; VFMJ11_2160.
GeneIDi6805948.
KEGGivfm:VFMJ11_2160.
PATRICi20122788. VBIVibFis37164_2084.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001139 Genomic DNA. Translation: ACH65234.1 .
RefSeqi WP_012532914.1. NC_011184.1.
YP_002156854.1. NC_011184.1.

3D structure databases

ProteinModelPortali B5FA40.
SMRi B5FA40. Positions 24-170.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 388396.VFMJ11_2160.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACH65234 ; ACH65234 ; VFMJ11_2160 .
GeneIDi 6805948.
KEGGi vfm:VFMJ11_2160.
PATRICi 20122788. VBIVibFis37164_2084.

Phylogenomic databases

eggNOGi COG2032.
HOGENOMi HOG000263449.
KOi K04565.
OMAi DHPKPLG.
OrthoDBi EOG6K13RS.

Family and domain databases

Gene3Di 2.60.40.200. 1 hit.
InterProi IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view ]
Pfami PF00080. Sod_Cu. 1 hit.
[Graphical view ]
SUPFAMi SSF49329. SSF49329. 1 hit.
PROSITEi PS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Vibrio fischeri strain MJ11."
    Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
    Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MJ11.

Entry informationi

Entry nameiB5FA40_VIBFM
AccessioniPrimary (citable) accession number: B5FA40
Entry historyi
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: September 3, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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