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B5F9Y7 (B5F9Y7_VIBFM) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Malate synthase RuleBase RU000555

EC=2.3.3.9 RuleBase RU000555
Gene names
Name:aceB EMBL ACH67187.1
Ordered Locus Names:VFMJ11_2107 EMBL ACH67187.1
OrganismVibrio fischeri (strain MJ11) [Complete proteome] [HAMAP] EMBL ACH67187.1
Taxonomic identifier388396 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length534 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Acetyl-CoA + H2O + glyoxylate = (S)-malate + CoA. RuleBase RU000555

Pathway

Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 2/2. RuleBase RU000555

Sequence similarities

Belongs to the malate synthase family. RuleBase RU000555

Ontologies

Keywords
   Biological processGlyoxylate bypass RuleBase RU000555
Tricarboxylic acid cycle RuleBase RU000555
   Molecular functionAcyltransferase EMBL ACH67187.1
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processglyoxylate cycle

Inferred from electronic annotation. Source: UniProtKB-UniPathway

tricarboxylic acid cycle

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionmalate synthase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1681Proton acceptor By similarity PIRSR PIRSR001363-1
Active site4491Proton donor By similarity PIRSR PIRSR001363-1

Sequences

Sequence LengthMass (Da)Tools
B5F9Y7 [UniParc].

Last modified October 14, 2008. Version 1.
Checksum: 640C2DB5A9FB5B93

FASTA53460,671
        10         20         30         40         50         60 
MTDTMTIKEQ QITITKPHLP QVEEVLTAGA VRFLTHVVEK FAHRVPELLE TRQLRQKKID 

        70         80         90        100        110        120 
AGQLPNFLSE TRSIRESEWS IQGIPTDLQD RRVEITGPTD RKMVINALNA NVKVFMADFE 

       130        140        150        160        170        180 
DSLSPSWEAV LNGQINLRDA MDGTIQYTNP QTQKVYQLKQ DPAVLICRVR GLHLPEKHVL 

       190        200        210        220        230        240 
FNGVAIPGAL FDFALYFYHN YQTSLKKGSG PYFYLPKLQA YQEAAWWSDV FSFAEREFGL 

       250        260        270        280        290        300 
KQGTIKATVL IETLPAVFEM DEILYSLKEH IVGLNCGRWD YIFSYIKTLK NHPDRVLPDR 

       310        320        330        340        350        360 
QVVTMEKPFL NAYSRLLIRT CHRRGAFAMG GMAAFIPSKD PEQNDWVLNK IQTDKSLEAN 

       370        380        390        400        410        420 
NGHDGTWVAH PGLADTARAE FDSVLGERMN QLDITRDTDA PITAEELLAP CEGERTEEGM 

       430        440        450        460        470        480 
RHNIRVAVQY IEAWISGNGC VPIYGLMEDA ATAEISRTSI WQWIQHGKTL DSGAVVTAEL 

       490        500        510        520        530 
FRTMLLEEMK VIEKELGTER FDSGQFTQAA KLMEQLTTSD QLTDFLTLPG YQYL 

« Hide

References

[1]"Complete sequence of Vibrio fischeri strain MJ11."
Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MJ11.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001139 Genomic DNA. Translation: ACH67187.1.
RefSeqYP_002156801.1. NC_011184.1.

3D structure databases

ProteinModelPortalB5F9Y7.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING388396.VFMJ11_2107.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACH67187; ACH67187; VFMJ11_2107.
GeneID6806014.
KEGGvfm:VFMJ11_2107.
PATRIC20122678. VBIVibFis37164_2029.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2225.
HOGENOMHOG000238464.
KOK01638.
OMAPGTIKCT.
OrthoDBEOG69WFFX.
ProtClustDBPRK09255.

Enzyme and pathway databases

UniPathwayUPA00703; UER00720.

Family and domain databases

InterProIPR011076. Malate_synth-like.
IPR006252. Malate_synthA.
IPR001465. Malate_synthase.
IPR019830. Malate_synthase_CS.
[Graphical view]
PANTHERPTHR21631:SF1. PTHR21631:SF1. 1 hit.
PfamPF01274. Malate_synthase. 1 hit.
[Graphical view]
PIRSFPIRSF001363. Malate_synth. 1 hit.
SUPFAMSSF51645. SSF51645. 1 hit.
TIGRFAMsTIGR01344. malate_syn_A. 1 hit.
PROSITEPS00510. MALATE_SYNTHASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB5F9Y7_VIBFM
AccessionPrimary (citable) accession number: B5F9Y7
Entry history
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: February 19, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)