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B5F7R5

- RSMB_SALA4

UniProt

B5F7R5 - RSMB_SALA4

Protein

Ribosomal RNA small subunit methyltransferase B

Gene

rsmB

Organism
Salmonella agona (strain SL483)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 45 (01 Oct 2014)
      Sequence version 1 (14 Oct 2008)
      Previous versions | rss
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    Functioni

    Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.UniRule annotation

    Catalytic activityi

    S-adenosyl-L-methionine + cytosine(967) in 16S rRNA = S-adenosyl-L-homocysteine + 5-methylcytosine(967) in 16S rRNA.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei277 – 2771S-adenosyl-L-methionineUniRule annotation
    Binding sitei303 – 3031S-adenosyl-L-methionineUniRule annotation
    Binding sitei322 – 3221S-adenosyl-L-methionineUniRule annotation
    Active sitei375 – 3751NucleophileUniRule annotation

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW
    2. rRNA (cytosine) methyltransferase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: InterPro

    Keywords - Molecular functioni

    Methyltransferase, Transferase

    Keywords - Biological processi

    rRNA processing

    Keywords - Ligandi

    RNA-binding, S-adenosyl-L-methionine

    Enzyme and pathway databases

    BioCyciSENT454166:GHBA-3576-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribosomal RNA small subunit methyltransferase BUniRule annotation (EC:2.1.1.176UniRule annotation)
    Alternative name(s):
    16S rRNA m5C967 methyltransferaseUniRule annotation
    rRNA (cytosine-C(5)-)-methyltransferase RsmBUniRule annotation
    Gene namesi
    Name:rsmBUniRule annotation
    Synonyms:sunUniRule annotation
    Ordered Locus Names:SeAg_B3604
    OrganismiSalmonella agona (strain SL483)
    Taxonomic identifieri454166 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
    ProteomesiUP000008819: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 429429Ribosomal RNA small subunit methyltransferase BPRO_0000366163Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi454166.SeAg_B3604.

    Structurei

    3D structure databases

    ProteinModelPortaliB5F7R5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni254 – 2607S-adenosyl-L-methionine bindingUniRule annotation

    Sequence similaritiesi

    Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0144.
    HOGENOMiHOG000037300.
    OMAiGHDGFYY.
    OrthoDBiEOG6091D0.

    Family and domain databases

    Gene3Di1.10.940.10. 1 hit.
    3.40.50.150. 1 hit.
    HAMAPiMF_01856. 16SrRNA_methyltr_B.
    InterProiIPR001678. Fmu/NOL1/Nop2p.
    IPR018314. Fmu/NOL1/Nop2p_CS.
    IPR006027. NusB_RsmB_TIM44.
    IPR023267. RCMT.
    IPR004573. rRNA_ssu_MeTfrase_B.
    IPR023541. rRNA_ssu_MeTfrase_B_ent.
    IPR029063. SAM-dependent_MTases-like.
    [Graphical view]
    PfamiPF01189. Nol1_Nop2_Fmu. 1 hit.
    PF01029. NusB. 1 hit.
    [Graphical view]
    PRINTSiPR02008. RCMTFAMILY.
    SUPFAMiSSF48013. SSF48013. 1 hit.
    SSF53335. SSF53335. 1 hit.
    TIGRFAMsiTIGR00563. rsmB. 1 hit.
    PROSITEiPS01153. NOL1_NOP2_SUN. 1 hit.
    PS51686. SAM_MT_RSMB_NOP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B5F7R5-1 [UniParc]FASTAAdd to Basket

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    MKKQNNLRSL AAQAVEQVVE QGQSLSNVLP PLQQKVADKD KALLQELCFG    50
    VLRTLSQLEW LINKLMSRPM TGKQRTVHYL IMVGFYQLLY TRVPPHAALA 100
    ETVEGAVSIK RPQLKGLING VLRQFQRQQE TLLNEFATSD ARFLHPGWLV 150
    KRLQNAYPTQ WQRIIEANNQ RPPMWLRVNR THHTRDGWLG LLEDAGMKGY 200
    PHPDYPDAVR LETPAPVHAL PGFAEGWVTV QDASAQGCAV FLAPQNGEHI 250
    LDLCAAPGGK TTHILEVAPE ADVLAVDIDE QRLSRVYDNL KRLGMKATVK 300
    QGDGRYPAQW CGEQQFDRIL LDAPCSATGV IRRHPDIKWL RRDRDIAELA 350
    QLQAEILDAV WPRLNPGGTL VYATCSVLPE ENRDQIKAFL QRTPDAALSE 400
    TGTPDQPGQQ NLPGGEEGDG FFYAKLIKK 429
    Length:429
    Mass (Da):48,070
    Last modified:October 14, 2008 - v1
    Checksum:i242E706DB290E8F7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001138 Genomic DNA. Translation: ACH51072.1.
    RefSeqiYP_002148329.1. NC_011149.1.

    Genome annotation databases

    EnsemblBacteriaiACH51072; ACH51072; SeAg_B3604.
    PATRICi18485450. VBISalEnt65316_3501.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001138 Genomic DNA. Translation: ACH51072.1 .
    RefSeqi YP_002148329.1. NC_011149.1.

    3D structure databases

    ProteinModelPortali B5F7R5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 454166.SeAg_B3604.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACH51072 ; ACH51072 ; SeAg_B3604 .
    PATRICi 18485450. VBISalEnt65316_3501.

    Phylogenomic databases

    eggNOGi COG0144.
    HOGENOMi HOG000037300.
    OMAi GHDGFYY.
    OrthoDBi EOG6091D0.

    Enzyme and pathway databases

    BioCyci SENT454166:GHBA-3576-MONOMER.

    Family and domain databases

    Gene3Di 1.10.940.10. 1 hit.
    3.40.50.150. 1 hit.
    HAMAPi MF_01856. 16SrRNA_methyltr_B.
    InterProi IPR001678. Fmu/NOL1/Nop2p.
    IPR018314. Fmu/NOL1/Nop2p_CS.
    IPR006027. NusB_RsmB_TIM44.
    IPR023267. RCMT.
    IPR004573. rRNA_ssu_MeTfrase_B.
    IPR023541. rRNA_ssu_MeTfrase_B_ent.
    IPR029063. SAM-dependent_MTases-like.
    [Graphical view ]
    Pfami PF01189. Nol1_Nop2_Fmu. 1 hit.
    PF01029. NusB. 1 hit.
    [Graphical view ]
    PRINTSi PR02008. RCMTFAMILY.
    SUPFAMi SSF48013. SSF48013. 1 hit.
    SSF53335. SSF53335. 1 hit.
    TIGRFAMsi TIGR00563. rsmB. 1 hit.
    PROSITEi PS01153. NOL1_NOP2_SUN. 1 hit.
    PS51686. SAM_MT_RSMB_NOP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution."
      Fricke W.F., Mammel M.K., McDermott P.F., Tartera C., White D.G., Leclerc J.E., Ravel J., Cebula T.A.
      J. Bacteriol. 193:3556-3568(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SL483.

    Entry informationi

    Entry nameiRSMB_SALA4
    AccessioniPrimary (citable) accession number: B5F7R5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 3, 2009
    Last sequence update: October 14, 2008
    Last modified: October 1, 2014
    This is version 45 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3