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B5EVE3 (B5EVE3_VIBFM) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Hyaluronate lyase EMBL ACH64505.1
Gene names
Ordered Locus Names:VFMJ11_A1113
OrganismVibrio fischeri (strain MJ11) [Complete proteome] [HAMAP]
Taxonomic identifier388396 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio

Protein attributes

Sequence length802 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLyase EMBL ACH64505.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentextracellular region

Inferred from electronic annotation. Source: InterPro

   Molecular functioncarbohydrate binding

Inferred from electronic annotation. Source: InterPro

carbon-oxygen lyase activity, acting on polysaccharides

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B5EVE3 [UniParc].

Last modified October 14, 2008. Version 1.
Checksum: CAF1E3DDF0FBA0B2

FASTA80290,266
        10         20         30         40         50         60 
MYMIKKHRLN TIALSMLFLY TGNAYAAKNT QTPQYLPSDF EQVRENWAEN YLGDPAITFD 

        70         80         90        100        110        120 
QTLKNMVTST NNSAQKHWDS MTPQPNASGI WDDLPLIDKD TTLGPNIRSS YQRLFTMAKA 

       130        140        150        160        170        180 
YRLRDGNLEN NQLMLNDIMT AMNYINQNFY FVNQLEYGNW WQWELAIPKD IHNILVLLFD 

       190        200        210        220        230        240 
DIKDNYQTII TSHLNATRYF TPDPTHLGVS PGAAESTNPN YRESTGGNRT DNAQVVLIRG 

       250        260        270        280        290        300 
MLENNSEEIS QAIAALPAVI EYVSEGDGYY TDGSFLQHSD IAYNGTYGNV LLGGLGIQMN 

       310        320        330        340        350        360 
AVAGSPWSMD NQTISAVYNI INQSYEPLLY KGAMMDMVNG RSISRSAEQN HDVGLNIVNS 

       370        380        390        400        410        420 
MLFYTNGPDN DKNKQLSSLI KTQITDDTYQ NFFDKIYYVS TYQAAQHIVN DPTISLKDPL 

       430        440        450        460        470        480 
IGNFSYPSMD RVVHRRNDWA FALAMHSYRI GNYECMNGEN LKGWFTGDGM TYLYNDQLDH 

       490        500        510        520        530        540 
YTGYWPTVNA SRMPGTTVDS QIMADCSGER VGGNVNTNMQ WVGSTSLNNY GIAGMQFYNW 

       550        560        570        580        590        600 
SDTLSAYKSW FMFDNEVVML GSNIKDQSNG NNITTIENRK RLTDTQLFID GTEQAVLPYQ 

       610        620        630        640        650        660 
GVPTTFSIRN KTLANSDLNY VMLTPKTISI SQNDVDGNWS DIGNSKGDVS DSYLQATLTQ 

       670        680        690        700        710        720 
VDQADYQYAL LPNQNNDAVQ TYAQHPDVTV LRQDEQAHAV QENTLNIIAA NNWKNSPVNI 

       730        740        750        760        770        780 
TDTITLNSMM GFMIKEESSN TFTVAVSEPI QTIDSVNFTF DKQGIVIKED IENRVVLNGT 

       790        800 
TLTINTSGLQ GQSYSFQVTI QD

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References

[1]"Complete sequence of Vibrio fischeri strain MJ11."
Mandel M.J., Stabb E.V., Ruby E.G., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G., Rogers Y.-H., Friedman R., Frazier M., Venter J.C.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001133 Genomic DNA. Translation: ACH64505.1.
RefSeqYP_002158661.1. NC_011186.1.

3D structure databases

ProteinModelPortalB5EVE3.
ModBaseSearch...

Protein-protein interaction databases

STRINGB5EVE3.

Protein family/group databases

CAZyPL8. Polysaccharide Lyase Family 8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6808583.
GenomeReviewsGene locus VFMJ11_A1113 in contig CP001133_GR.
KEGGvfm:VFMJ11_A1113.
PATRIC20126438. VBIVibFis37164_3842.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG740693.
OMATKTYRNI.
ProtClustDBCLSK257327.

Family and domain databases

InterProIPR008929. Chondroitin_lyas.
IPR011013. Glyco_hydro-type_carb-bd.
IPR014718. Glyco_hydro-type_carb-bd_sub.
IPR011071. Lyase_8-like_C.
IPR012970. Lyase_8_alpha_N.
IPR004103. Lyase_8_C.
IPR003159. Lyase_8_central_dom.
IPR012329. Lyase_8_N.
[Graphical view]
Gene3DG3DSA:2.70.98.10. Glyco_hydro_42_D5. 1 hit.
G3DSA:2.60.220.10. Lyase_8_C. 1 hit.
G3DSA:1.50.10.100. Lyase_8_N. 1 hit.
KOK01727.
PfamPF02278. Lyase_8. 1 hit.
PF02884. Lyase_8_C. 1 hit.
PF08124. Lyase_8_N. 1 hit.
[Graphical view]
SUPFAMSSF48230. Chondroitin_lyas. 1 hit.
SSF74650. Gal_mut_like. 1 hit.
SSF49863. Lyase_like_C. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB5EVE3_VIBFM
AccessionPrimary (citable) accession number: B5EVE3
Entry history
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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