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Protein

Polyribonucleotide nucleotidyltransferase

Gene

pnp

Organism
Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum ferrooxidans (ATCC 53993))
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction.UniRule annotation

Catalytic activityi

RNA(n+1) + phosphate = RNA(n) + a nucleoside diphosphate.UniRule annotation

Cofactori

Mg2+UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi484MagnesiumUniRule annotation1
Metal bindingi490MagnesiumUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferase, RNA-binding, Transferase
LigandMagnesium, Metal-binding

Enzyme and pathway databases

BioCyciAFER380394:G1GCL-569-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Polyribonucleotide nucleotidyltransferaseUniRule annotation (EC:2.7.7.8UniRule annotation)
Alternative name(s):
Polynucleotide phosphorylaseUniRule annotation
Short name:
PNPaseUniRule annotation
Gene namesi
Name:pnpUniRule annotation
Ordered Locus Names:Lferr_0559
OrganismiAcidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum ferrooxidans (ATCC 53993))
Taxonomic identifieri380394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAcidithiobacilliaAcidithiobacillalesAcidithiobacillaceaeAcidithiobacillus
Proteomesi
  • UP000001856 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10001478761 – 692Polyribonucleotide nucleotidyltransferaseAdd BLAST692

Proteomic databases

PRIDEiB5EMD4

Interactioni

Subunit structurei

Component of the RNA degradosome, which is a multiprotein complex involved in RNA processing and mRNA degradation.UniRule annotation

Protein-protein interaction databases

STRINGi380394.Lferr_0559

Structurei

3D structure databases

ProteinModelPortaliB5EMD4
SMRiB5EMD4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini551 – 610KHUniRule annotationAdd BLAST60
Domaini620 – 688S1 motifUniRule annotationAdd BLAST69

Sequence similaritiesi

Belongs to the polyribonucleotide nucleotidyltransferase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105C62 Bacteria
COG1185 LUCA
HOGENOMiHOG000218327
KOiK00962
OMAiRYMHNYN
OrthoDBiPOG091H00M0

Family and domain databases

Gene3Di3.30.1370.10, 1 hit
3.30.230.70, 2 hits
HAMAPiMF_01595 PNPase, 1 hit
InterProiView protein in InterPro
IPR001247 ExoRNase_PH_dom1
IPR015847 ExoRNase_PH_dom2
IPR036345 ExoRNase_PH_dom2_sf
IPR004087 KH_dom
IPR004088 KH_dom_type_1
IPR036612 KH_dom_type_1_sf
IPR012340 NA-bd_OB-fold
IPR012162 PNPase
IPR027408 PNPase/RNase_PH_dom_sf
IPR015848 PNPase_PH_RNA-bd_bac/org-type
IPR020568 Ribosomal_S5_D2-typ_fold
IPR022967 S1_dom
IPR003029 S1_domain
PANTHERiPTHR11252 PTHR11252, 1 hit
PfamiView protein in Pfam
PF00013 KH_1, 1 hit
PF03726 PNPase, 1 hit
PF01138 RNase_PH, 2 hits
PF03725 RNase_PH_C, 2 hits
PF00575 S1, 1 hit
PIRSFiPIRSF005499 PNPase, 1 hit
SMARTiView protein in SMART
SM00322 KH, 1 hit
SM00316 S1, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
SSF54211 SSF54211, 2 hits
SSF54791 SSF54791, 1 hit
SSF55666 SSF55666, 2 hits
TIGRFAMsiTIGR03591 polynuc_phos, 1 hit
PROSITEiView protein in PROSITE
PS50084 KH_TYPE_1, 1 hit
PS50126 S1, 1 hit

Sequencei

Sequence statusi: Complete.

B5EMD4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTMIRKEVDF GGRRLQLETG RMARQADGAV LVSSGDTVVL VTAVGRREMK
60 70 80 90 100
PGQDFFPLTV NYQEKAYAAG KIPGGFFKRE GRPTEKETLT SRLIDRPIRP
110 120 130 140 150
LFPKGFMNEV QVIATVVSVD RDNDPDILAL VGASAALAVS GIPFNGPIGA
160 170 180 190 200
ARVAYIDGKY VLNPSYAQLT TSQLDLVVAG TRQAVLMVES EAQQLSEEIM
210 220 230 240 250
LEAVMFGHAQ FQPVIETIEA LAREAGKPRW EWVAPVADEA LGVQVREKAT
260 270 280 290 300
PLLQEAYALT EKQARSKRLE DVQQAMAVEF GSDDAGRGDM VRGLLKKIET
310 320 330 340 350
GIVRGRILDG APRIDGRDSK TVRPITIEAG VLPRTHGSAL FTRGETQALV
360 370 380 390 400
VATLGTKGDE QIIDALQGES RDRFMLHYNF PPFSTGETGM VGSPKRREIG
410 420 430 440 450
HGRLAKRAIA AVLPTDSEFP YSLRVVSEVL ESNGSSSMAT VCGASLALMD
460 470 480 490 500
AGVPLKAPVA GVAMGLIKEG ARFAVLTDIL GDEDHLGDMD FKVAGTEQGV
510 520 530 540 550
TALQMDIKID GITREIMAQA LQQALAGRLH ILGLMNGVLS RGRGELSDYA
560 570 580 590 600
PRIITIQINP DRIRDVIGPG GKVIRALTEE TGATIDIQDN GTVTIASVDG
610 620 630 640 650
EAGAAAKRRI ELLTADVQVD TIYDGKVAKI MDFGAFVTIL PGRDGLLHIS
660 670 680 690
QISNERVSDV HDHLKEGQAV RVKVLEVDRQ GKIKLSMKDI PQ
Length:692
Mass (Da):74,623
Last modified:October 14, 2008 - v1
Checksum:iBA9077A497930C75
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001132 Genomic DNA Translation: ACH82813.1
RefSeqiWP_009567342.1, NC_011206.1

Genome annotation databases

EnsemblBacteriaiACH82813; ACH82813; Lferr_0559
KEGGiafe:Lferr_0559

Similar proteinsi

Entry informationi

Entry nameiPNP_ACIF5
AccessioniPrimary (citable) accession number: B5EMD4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: October 14, 2008
Last modified: May 23, 2018
This is version 61 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome
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Main funding by: National Institutes of Health