B5EI85 (B5EI85_GEOBB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

Gbem_1330 EMBL ACH38349.1

Organism

Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) [Complete proteome] [HAMAP] EMBL ACH38349.1

Taxonomic identifier

404380 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Deltaproteobacteria › Desulfuromonadales › Geobacteraceae › Geobacter › Geobacter bemidjiensis

Protein attributes

Sequence length	293 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B5EI85 [UniParc]. Last modified October 14, 2008. Version 1. Checksum: 4233C32A5A5D7773	FASTA	293	33,620
	10 20 30 40 50 60 MGISPYRATV TMPRMEQPYP SVLDFLVGRF PKVSRSCWER RIAQGKVLGE DGTPITSASS 70 80 90 100 110 120 YAPQKRIFYF REIENEKVIP FAEEILFQND ELLVACKPHF LPVTPGGEYL SQSLLHRLRE 130 140 150 160 170 180 STGIHDLVPL HRIDRETAGI VLFSANPKTR GRYGELFREG SIEKSYEAIS AAPVEPGQAE 190 200 210 220 230 240 WLVENRLVHG EPWFTMRTEQ GPPNARSLIR LVEQRDGAAR FQLTPVTGKT HQLRVHMSGL 250 260 270 280 290 GLQILHDRLY PQLQPQQPDD FDRPLQLLAR RVRFRDPLSG RLLEFESARR LLW

References

[1]

"Complete sequence of Geobacter bemidjiensis BEM." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Lovley D., Richardson P. Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bem / ATCC BAA-1014 / DSM 16622.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001124 Genomic DNA. Translation: ACH38349.1.
RefSeq	YP_002138145.1. NC_011146.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	404380.Gbem_1330.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACH38349; ACH38349; Gbem_1330.
GeneID	6781317.
KEGG	gbm:Gbem_1330.
PATRIC	21986386. VBIGeoBem56306_1321.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0564.
HOGENOM	HOG000275916.
KO	K06177.
OMA	FFRMHEV.
ProtClustDB	CLSK2324686.
Enzyme and pathway databases
BioCyc	GBEM404380:GHFR-1366-MONOMER.
Family and domain databases
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B5EI85_GEOBB

Accession

Primary (citable) accession number: B5EI85

Entry history

Integrated into UniProtKB/TrEMBL:	October 14, 2008
Last sequence update:	October 14, 2008
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)