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Protein

Superoxide dismutase

Gene

sodA

Organism
Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

Metal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciGBEM404380:GHFR-2253-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodAImported
Ordered Locus Names:Gbem_2204Imported
OrganismiGeobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)Imported
Taxonomic identifieri404380 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
Proteomesi
  • UP000008825 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi404380.Gbem_2204.

Structurei

3D structure databases

ProteinModelPortaliB5EE71.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini91 – 191101Sod_Fe_CInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4107XIJ. Bacteria.
COG0605. LUCA.
HOGENOMiHOG000013583.
KOiK04564.
OMAiDAHDNGA.
OrthoDBiEOG6MPWTR.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.

Sequencei

Sequence statusi: Complete.

B5EE71-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAFTAKDYS RLIGMPGFSE TLLNNHFTLY QGYVKNTNTL DDALTELRKS
60 70 80 90 100
GKGSDPGFAE LKRRFGWEFN GMRLHEYYFE NLGGNQPINQ DGRLASRIHQ
110 120 130 140 150
DFGGFDEWVQ DFKSVGAMRG IGWAIMYQDL SNGRLLNFWI NEHDAGHPAG
160 170 180 190
CTPVLIMDVF EHAFMTDYGL KRADYINAFF QNIDWNSAEQ RLQM
Length:194
Mass (Da):22,301
Last modified:October 14, 2008 - v1
Checksum:iEB1F3AA1F678A206
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001124 Genomic DNA. Translation: ACH39216.1.
RefSeqiWP_012530637.1. NC_011146.1.

Genome annotation databases

EnsemblBacteriaiACH39216; ACH39216; Gbem_2204.
KEGGigbm:Gbem_2204.
PATRICi21988084. VBIGeoBem56306_2164.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001124 Genomic DNA. Translation: ACH39216.1.
RefSeqiWP_012530637.1. NC_011146.1.

3D structure databases

ProteinModelPortaliB5EE71.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi404380.Gbem_2204.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACH39216; ACH39216; Gbem_2204.
KEGGigbm:Gbem_2204.
PATRICi21988084. VBIGeoBem56306_2164.

Phylogenomic databases

eggNOGiENOG4107XIJ. Bacteria.
COG0605. LUCA.
HOGENOMiHOG000013583.
KOiK04564.
OMAiDAHDNGA.
OrthoDBiEOG6MPWTR.

Enzyme and pathway databases

BioCyciGBEM404380:GHFR-2253-MONOMER.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bem / ATCC BAA-1014 / DSM 16622Imported.

Entry informationi

Entry nameiB5EE71_GEOBB
AccessioniPrimary (citable) accession number: B5EE71
Entry historyi
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: April 13, 2016
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.